LOC_Os05g20020.1


Description : Polygalacturonase At1g48100 OS=Arabidopsis thaliana (sp|q949z1|pglr4_arath : 536.0) & Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase(50.3.2 : 197.0)


Gene families : OG0000096 (Archaeplastida) Phylogenetic Tree(s): OG0000096_tree ,
OG_05_0000636 (LandPlants) Phylogenetic Tree(s): OG_05_0000636_tree ,
OG_06_0002274 (SeedPlants) Phylogenetic Tree(s): OG_06_0002274_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g20020.1
Cluster HCCA: Cluster_235

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00081p00144410 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.02 Archaeplastida
AMTR_s00096p00099360 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.04 Archaeplastida
AMTR_s00096p00105250 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.02 Archaeplastida
AT1G05650 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT1G23460 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT1G48100 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT1G65570 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT3G26610 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT5G14650 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT5G39910 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
GSVIVT01008061001 No alias Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01008062001 No alias Polygalacturonase OS=Juniperus ashei 0.04 Archaeplastida
GSVIVT01017302001 No alias Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01017305001 No alias Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01032118001 No alias Cell wall.pectin.modification and... 0.02 Archaeplastida
GSVIVT01032447001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01038241001 No alias Polygalacturonase OS=Prunus persica 0.03 Archaeplastida
GSVIVT01038243001 No alias Polygalacturonase OS=Prunus persica 0.03 Archaeplastida
Gb_05788 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.03 Archaeplastida
Gb_27331 No alias Polygalacturonase OS=Actinidia deliciosa... 0.02 Archaeplastida
Solyc01g087280.2.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc02g067640.3.1 No alias Polygalacturonase OS=Prunus persica... 0.02 Archaeplastida
Solyc04g008230.3.1 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc04g015530.3.1 No alias polygalacturonase (QRT2) 0.02 Archaeplastida
Solyc05g005040.4.1 No alias polygalacturonase (PGX1) 0.03 Archaeplastida
Solyc08g014540.1.1 No alias Polygalacturonase OS=Prunus persica... 0.03 Archaeplastida
Solyc08g014560.3.1 No alias Polygalacturonase OS=Prunus persica... 0.04 Archaeplastida
Solyc12g009420.3.1 No alias Polygalacturonase QRT2 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc12g019120.2.1 No alias Polygalacturonase OS=Prunus persica... 0.02 Archaeplastida
Zm00001e017565_P001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e027720_P001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0005984 disaccharide metabolic process IEP Neighborhood
BP GO:0005991 trehalose metabolic process IEP Neighborhood
BP GO:0005992 trehalose biosynthetic process IEP Neighborhood
BP GO:0007275 multicellular organism development IEP Neighborhood
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Neighborhood
MF GO:0008417 fucosyltransferase activity IEP Neighborhood
BP GO:0009311 oligosaccharide metabolic process IEP Neighborhood
BP GO:0009312 oligosaccharide biosynthetic process IEP Neighborhood
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
BP GO:0042546 cell wall biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0046351 disaccharide biosynthetic process IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 122 437
No external refs found!