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  5. LOC_Os05g20050.1

LOC_Os05g20050.1


Description : A-class RAB GTPase


Gene families : OG0000173 (Archaeplastida) Phylogenetic Tree(s): OG0000173_tree ,
OG_05_0000161 (LandPlants) Phylogenetic Tree(s): OG_05_0000161_tree ,
OG_06_0000127 (SeedPlants) Phylogenetic Tree(s): OG_06_0000127_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g20050.1
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00103890 evm_27.TU.AmTr_v1... Vesicle trafficking.regulation of membrane tethering and... 0.02 Archaeplastida
AT1G01200 RABA3, ATRAB-A3, ATRABA3 RAB GTPase homolog A3 0.02 Archaeplastida
AT1G16920 ATRABA1B, RAB11, RABA1b RAB GTPase homolog A1B 0.03 Archaeplastida
AT1G73640 RABA6a, AtRABA6a RAB GTPase homolog A6A 0.15 Archaeplastida
GSVIVT01020651001 No alias Ras-related protein RABA1e OS=Arabidopsis thaliana 0.07 Archaeplastida
GSVIVT01021253001 No alias Vesicle trafficking.regulation of membrane tethering and... 0.03 Archaeplastida
GSVIVT01023225001 No alias Vesicle trafficking.regulation of membrane tethering and... 0.02 Archaeplastida
Gb_03447 No alias A-class RAB GTPase 0.03 Archaeplastida
Gb_37703 No alias A-class RAB GTPase 0.03 Archaeplastida
LOC_Os03g62600.1 No alias A-class RAB GTPase 0.03 Archaeplastida
MA_177507g0010 No alias Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii... 0.03 Archaeplastida
MA_59492g0010 No alias A-class RAB GTPase 0.02 Archaeplastida
Pp3c14_15310V3.1 No alias RAB GTPase homolog A2B 0.02 Archaeplastida
Pp3c23_7840V3.1 No alias RAB GTPase homolog A4D 0.01 Archaeplastida
Smo146310 No alias Vesicle trafficking.regulation of membrane tethering and... 0.02 Archaeplastida
Solyc02g072180.3.1 No alias A-class RAB GTPase 0.02 Archaeplastida
Solyc03g118820.4.1 No alias A-class RAB GTPase 0.02 Archaeplastida
Solyc10g045550.2.1 No alias A-class RAB GTPase 0.03 Archaeplastida
Zm00001e000673_P001 No alias A-class RAB GTPase 0.05 Archaeplastida
Zm00001e006316_P001 No alias A-class RAB GTPase 0.02 Archaeplastida
Zm00001e009700_P001 No alias A-class RAB GTPase 0.02 Archaeplastida
Zm00001e020213_P001 No alias A-class RAB GTPase 0.03 Archaeplastida
Zm00001e027669_P001 No alias A-class RAB GTPase 0.04 Archaeplastida
Zm00001e028750_P001 No alias A-class RAB GTPase 0.02 Archaeplastida
Zm00001e031368_P002 No alias A-class RAB GTPase 0.11 Archaeplastida
Zm00001e033825_P001 No alias A-class RAB GTPase 0.02 Archaeplastida
Zm00001e038828_P001 No alias A-class RAB GTPase 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004568 chitinase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005096 GTPase activator activity IEP Neighborhood
MF GO:0005484 SNAP receptor activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006022 aminoglycan metabolic process IEP Neighborhood
BP GO:0006026 aminoglycan catabolic process IEP Neighborhood
BP GO:0006030 chitin metabolic process IEP Neighborhood
BP GO:0006032 chitin catabolic process IEP Neighborhood
BP GO:0006040 amino sugar metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Neighborhood
MF GO:0008047 enzyme activator activity IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
BP GO:0009250 glucan biosynthetic process IEP Neighborhood
BP GO:0010215 cellulose microfibril organization IEP Neighborhood
MF GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEP Neighborhood
MF GO:0015020 glucuronosyltransferase activity IEP Neighborhood
BP GO:0016051 carbohydrate biosynthetic process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016759 cellulose synthase activity IEP Neighborhood
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Neighborhood
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
BP GO:0030198 extracellular matrix organization IEP Neighborhood
BP GO:0030243 cellulose metabolic process IEP Neighborhood
BP GO:0030244 cellulose biosynthetic process IEP Neighborhood
MF GO:0030695 GTPase regulator activity IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Neighborhood
MF GO:0033897 ribonuclease T2 activity IEP Neighborhood
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0042737 drug catabolic process IEP Neighborhood
BP GO:0043062 extracellular structure organization IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
BP GO:0046348 amino sugar catabolic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
BP GO:0051273 beta-glucan metabolic process IEP Neighborhood
BP GO:0051274 beta-glucan biosynthetic process IEP Neighborhood
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Neighborhood
MF GO:0070569 uridylyltransferase activity IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1901071 glucosamine-containing compound metabolic process IEP Neighborhood
BP GO:1901072 glucosamine-containing compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001806 Small_GTPase 14 173
No external refs found!