LOC_Os05g22860.1

Description : DNA-directed RNA polymerase subunit beta OS=Oryza sativa subsp. indica (sp|p0c502|rpob_orysi : 828.0)

Gene families : OG0001479 (Archaeplastida) Phylogenetic Tree(s): OG0001479_tree ,
OG_05_0001081 (LandPlants) Phylogenetic Tree(s): OG_05_0001081_tree ,
OG_06_0001102 (SeedPlants) Phylogenetic Tree(s): OG_06_0001102_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os05g22860.1
Cluster	HCCA: Cluster_125

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00102p00108130	evm_27.TU.AmTr_v1...	DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda	0.1	Archaeplastida
AMTR_s00145p00090170	evm_27.TU.AmTr_v1...	DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda	0.08	Archaeplastida
AMTR_s00626p00011520	evm_27.TU.AmTr_v1...	DNA-directed RNA polymerase subunit beta OS=Morus indica	0.1	Archaeplastida
AMTR_s01499p00009870	evm_27.TU.AmTr_v1...	DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda	0.08	Archaeplastida
ATCG00190	RPOB	RNA polymerase subunit beta	0.22	Archaeplastida
GSVIVT01035251001	No alias	DNA-directed RNA polymerase subunit beta OS=Vitis vinifera	0.03	Archaeplastida
Gb_02251	No alias	RpoB core component plastid-encoded RNA polymerase	0.07	Archaeplastida
Gb_06830	No alias	DNA-directed RNA polymerase subunit beta OS=Pinus...	0.07	Archaeplastida
Gb_09029	No alias	DNA-directed RNA polymerase subunit beta OS=Cycas...	0.04	Archaeplastida
Mp1g13170.1	No alias	DNA-directed RNA polymerase subunit beta OS=Marchantia...	0.07	Archaeplastida
Mp6g01430.1	No alias	no hits & (original description: none)	0.09	Archaeplastida
Mp6g21490.1	No alias	no hits & (original description: none)	0.12	Archaeplastida
Smo236845	No alias	RNA biosynthesis.organelle machineries.RNA polymerase...	0.06	Archaeplastida
Smo237022	No alias	RNA biosynthesis.organelle machineries.RNA polymerase...	0.06	Archaeplastida
Smo237023	No alias	RNA biosynthesis.organelle machineries.RNA polymerase...	0.06	Archaeplastida
Solyc00g500053.1.1	No alias	DNA-directed RNA polymerase subunit beta OS=Nicotiana...	0.18	Archaeplastida
Solyc01g095950.1.1	No alias	DNA-directed RNA polymerase subunit beta OS=Solanum...	0.18	Archaeplastida
Solyc02g067590.2.1	No alias	DNA-directed RNA polymerase subunit beta OS=Liriodendron...	0.18	Archaeplastida
Solyc08g028750.1.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
Solyc10g017920.1.1	No alias	DNA-directed RNA polymerase subunit beta OS=Solanum...	0.17	Archaeplastida
Solyc12g035790.2.1	No alias	regulatory component YCF2 of AAA-ATPase motor complex	0.2	Archaeplastida
Solyc12g035870.3.1	No alias	DNA-directed RNA polymerase subunit beta OS=Solanum...	0.2	Archaeplastida
Zm00001e042040_P001	No alias	no hits & (original description: none)	0.09	Archaeplastida
Zm00001e042070_P001	No alias	no hits & (original description: none)	0.09	Archaeplastida
Zm00001e042106_P001	No alias	no hits & (original description: none)	0.09	Archaeplastida
Zm00001e042170_P001	No alias	no hits & (original description: none)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003735	structural constituent of ribosome	IEP	Neighborhood
MF	GO:0005198	structural molecule activity	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
CC	GO:0005840	ribosome	IEP	Neighborhood
BP	GO:0006091	generation of precursor metabolites and energy	IEP	Neighborhood
BP	GO:0006412	translation	IEP	Neighborhood
BP	GO:0006518	peptide metabolic process	IEP	Neighborhood
CC	GO:0009521	photosystem	IEP	Neighborhood
CC	GO:0009522	photosystem I	IEP	Neighborhood
CC	GO:0009523	photosystem II	IEP	Neighborhood
CC	GO:0009539	photosystem II reaction center	IEP	Neighborhood
CC	GO:0009579	thylakoid	IEP	Neighborhood
BP	GO:0009767	photosynthetic electron transport chain	IEP	Neighborhood
BP	GO:0010109	regulation of photosynthesis	IEP	Neighborhood
BP	GO:0015979	photosynthesis	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
CC	GO:0016021	integral component of membrane	IEP	Neighborhood
MF	GO:0016168	chlorophyll binding	IEP	Neighborhood
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	Neighborhood
BP	GO:0019538	protein metabolic process	IEP	Neighborhood
BP	GO:0019684	photosynthesis, light reaction	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
BP	GO:0022900	electron transport chain	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
BP	GO:0042548	regulation of photosynthesis, light reaction	IEP	Neighborhood
BP	GO:0042549	photosystem II stabilization	IEP	Neighborhood
BP	GO:0043043	peptide biosynthetic process	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043228	non-membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043467	regulation of generation of precursor metabolites and energy	IEP	Neighborhood
BP	GO:0043603	cellular amide metabolic process	IEP	Neighborhood
BP	GO:0043604	amide biosynthetic process	IEP	Neighborhood
BP	GO:0044267	cellular protein metabolic process	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044425	membrane part	IEP	Neighborhood
CC	GO:0044436	thylakoid part	IEP	Neighborhood
CC	GO:0044444	cytoplasmic part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
MF	GO:0046906	tetrapyrrole binding	IEP	Neighborhood
MF	GO:0048037	cofactor binding	IEP	Neighborhood
MF	GO:0048038	quinone binding	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood
CC	GO:0098796	membrane protein complex	IEP	Neighborhood
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Neighborhood
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Neighborhood
CC	GO:1990904	ribonucleoprotein complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR007120	DNA-dir_RNAP_su2_dom	1	317
IPR007641	RNA_pol_Rpb2_7	319	394

External Links

No external refs found!

LOC_Os05g22860.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation