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  5. LOC_Os05g27820.1

LOC_Os05g27820.1


Description : Patellin-6 OS=Arabidopsis thaliana (sp|q9scu1|patl6_arath : 524.0)


Gene families : OG0000809 (Archaeplastida) Phylogenetic Tree(s): OG0000809_tree ,
OG_05_0000939 (LandPlants) Phylogenetic Tree(s): OG_05_0000939_tree ,
OG_06_0008933 (SeedPlants) Phylogenetic Tree(s): OG_06_0008933_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g27820.1
Cluster HCCA: Cluster_97

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00086020 evm_27.TU.AmTr_v1... Patellin-6 OS=Arabidopsis thaliana 0.07 Archaeplastida
AMTR_s00032p00036450 evm_27.TU.AmTr_v1... Patellin-4 OS=Arabidopsis thaliana 0.02 Archaeplastida
AT3G51670 No alias SEC14 cytosolic factor family protein / phosphoglyceride... 0.05 Archaeplastida
GSVIVT01000569001 No alias Patellin-6 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01021727001 No alias Patellin-4 OS=Arabidopsis thaliana 0.05 Archaeplastida
MA_19741g0010 No alias Patellin-6 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_9244g0010 No alias Patellin-5 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc02g070210.3.1 No alias Patellin-4 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Solyc06g064940.3.1 No alias Patellin-5 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e019109_P003 No alias Patellin-5 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e026912_P001 No alias Patellin-6 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e031502_P004 No alias Patellin-6 OS=Arabidopsis thaliana... 0.09 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
MF GO:0015035 protein disulfide oxidoreductase activity IEP Neighborhood
MF GO:0015036 disulfide oxidoreductase activity IEP Neighborhood
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR011074 CRAL/TRIO_N_dom 106 130
IPR001251 CRAL-TRIO_dom 156 315
No external refs found!