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  5. AMTR_s00006p00248360

AMTR_s00006p00248360 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00006.138

Description : Phytohormones.auxin.transport.polar auxin transport.BIG regulator protein


Gene families : OG0001460 (Archaeplastida) Phylogenetic Tree(s): OG0001460_tree ,
OG_05_0004241 (LandPlants) Phylogenetic Tree(s): OG_05_0004241_tree ,
OG_06_0005517 (SeedPlants) Phylogenetic Tree(s): OG_06_0005517_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00006p00248360
Cluster HCCA: Cluster_147

Target Alias Description ECC score Gene Family Method Actions
AT3G02260 DOC1, ASA1,... auxin transport protein (BIG) 0.14 Archaeplastida
Cpa|evm.model.tig00000158.22 No alias Auxin transport protein BIG OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01036538001 No alias Phytohormones.auxin.transport.polar auxin transport.BIG... 0.12 Archaeplastida
Gb_03145 No alias BIG auxin transport regulator protein 0.12 Archaeplastida
LOC_Os09g07300.1 No alias BIG auxin transport regulator protein 0.07 Archaeplastida
MA_10425891g0010 No alias BIG auxin transport regulator protein 0.12 Archaeplastida
MA_10436857g0010 No alias Auxin transport protein BIG OS=Arabidopsis thaliana... 0.11 Archaeplastida
MA_10437010g0010 No alias No annotation 0.05 Archaeplastida
MA_10437010g0030 No alias Auxin transport protein BIG OS=Oryza sativa subsp.... 0.05 Archaeplastida
MA_141071g0010 No alias Auxin transport protein BIG OS=Arabidopsis thaliana... 0.07 Archaeplastida
MA_14729g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_18467g0010 No alias Auxin transport protein BIG OS=Oryza sativa subsp.... 0.06 Archaeplastida
MA_92502g0010 No alias Rac-like GTP-binding protein 7 OS=Oryza sativa subsp.... 0.04 Archaeplastida
Mp2g04600.1 No alias BIG auxin transport regulator protein 0.06 Archaeplastida
Pp3c11_22340V3.1 No alias auxin transport protein (BIG) 0.06 Archaeplastida
Smo141341 No alias Phytohormones.auxin.transport.polar auxin transport.BIG... 0.08 Archaeplastida
Solyc02g089260.4.1 No alias BIG auxin transport regulator protein 0.06 Archaeplastida
Zm00001e033628_P002 No alias BIG auxin transport regulator protein 0.17 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
InterPro domains Description Start Stop
IPR000433 Znf_ZZ 2611 2643
IPR025704 E3_Ub_ligase_UBR4 4081 4967
IPR003126 Znf_UBR 1569 1634
No external refs found!