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  5. LOC_Os05g28300.1

LOC_Os05g28300.1


Description : component ADA3 of SAGA transcription co-activator complex


Gene families : OG0002472 (Archaeplastida) Phylogenetic Tree(s): OG0002472_tree ,
OG_05_0001862 (LandPlants) Phylogenetic Tree(s): OG_05_0001862_tree ,
OG_06_0002456 (SeedPlants) Phylogenetic Tree(s): OG_06_0002456_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g28300.1
Cluster HCCA: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00031p00010980 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.07 Archaeplastida
AT4G29790 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.05 Archaeplastida
GSVIVT01015158001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.06 Archaeplastida
Gb_07255 No alias component ADA3 of SAGA transcription co-activator complex 0.05 Archaeplastida
Mp1g06630.1 No alias component ADA3 of SAGA transcription co-activator complex 0.04 Archaeplastida
Pp3c15_5990V3.1 No alias No annotation 0.03 Archaeplastida
Pp3c20_610V3.1 No alias No annotation 0.09 Archaeplastida
Pp3c20_790V3.1 No alias No annotation 0.04 Archaeplastida
Smo407119 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.05 Archaeplastida
Solyc07g040980.3.1 No alias component ADA3 of SAGA transcription co-activator complex 0.04 Archaeplastida
Solyc11g006960.2.1 No alias component ADA3 of SAGA transcription co-activator complex 0.04 Archaeplastida
Zm00001e018678_P002 No alias component ADA3 of SAGA transcription co-activator complex 0.06 Archaeplastida
Zm00001e027665_P001 No alias component ADA3 of SAGA transcription co-activator complex 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005516 calmodulin binding IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0015399 primary active transmembrane transporter activity IEP Neighborhood
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
MF GO:0070566 adenylyltransferase activity IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!