AMTR_s00006p00248860 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00006.141

Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.DOF transcription factor

Gene families : OG0000060 (Archaeplastida) Phylogenetic Tree(s): OG0000060_tree ,
OG_05_0000025 (LandPlants) Phylogenetic Tree(s): OG_05_0000025_tree ,
OG_06_0000055 (SeedPlants) Phylogenetic Tree(s): OG_06_0000055_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00006p00248860
Cluster	HCCA: Cluster_115

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00160p00046100	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
AT1G21340	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Archaeplastida
AT1G29160	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Archaeplastida
AT2G34140	No alias	Dof-type zinc finger DNA-binding family protein	0.05	Archaeplastida
AT3G21270	ADOF2, DOF2	DOF zinc finger protein 2	0.02	Archaeplastida
AT3G45610	No alias	Dof-type zinc finger DNA-binding family protein	0.02	Archaeplastida
AT3G47500	CDF3	cycling DOF factor 3	0.03	Archaeplastida
AT3G55370	OBP3	OBF-binding protein 3	0.03	Archaeplastida
AT4G00940	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Archaeplastida
AT4G24060	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Archaeplastida
AT5G60200	TMO6	TARGET OF MONOPTEROS 6	0.04	Archaeplastida
AT5G60850	OBP4	OBF binding protein 4	0.01	Archaeplastida
AT5G65590	No alias	Dof-type zinc finger DNA-binding family protein	0.03	Archaeplastida
AT5G66940	No alias	Dof-type zinc finger DNA-binding family protein	0.02	Archaeplastida
GSVIVT01002242001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
GSVIVT01005057001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
GSVIVT01019619001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
GSVIVT01034189001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
Gb_20144	No alias	transcription factor (DOF)	0.02	Archaeplastida
Gb_20867	No alias	Cyclic dof factor 3 OS=Arabidopsis thaliana...	0.02	Archaeplastida
Gb_35447	No alias	transcription factor (DOF)	0.03	Archaeplastida
LOC_Os02g15350.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
LOC_Os02g45200.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
LOC_Os02g47810.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
LOC_Os03g16850.1	No alias	transcription factor (DOF)	0.05	Archaeplastida
LOC_Os03g60630.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
LOC_Os04g47990.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
LOC_Os05g02150.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
LOC_Os07g13260.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
LOC_Os07g32510.1	No alias	transcription factor (DOF)	0.05	Archaeplastida
LOC_Os07g48570.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
MA_16692g0010	No alias	transcription factor (DOF)	0.03	Archaeplastida
MA_7537g0010	No alias	transcription factor (DOF)	0.03	Archaeplastida
Pp3c13_21190V3.1	No alias	cycling DOF factor 3	0.02	Archaeplastida
Pp3c15_3180V3.1	No alias	cycling DOF factor 3	0.02	Archaeplastida
Pp3c6_13360V3.1	No alias	cycling DOF factor 3	0.02	Archaeplastida
Pp3c9_4910V3.1	No alias	cycling DOF factor 2	0.03	Archaeplastida
Solyc02g067230.3.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
Solyc02g076850.2.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
Solyc02g077950.3.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
Solyc02g078620.1.1	No alias	transcription factor (DOF)	0.04	Archaeplastida
Solyc03g082840.3.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
Solyc03g121400.1.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
Solyc05g007880.4.1	No alias	Cyclic dof factor 2 OS=Arabidopsis thaliana...	0.02	Archaeplastida
Solyc06g062520.1.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
Solyc06g069760.3.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
Solyc06g075370.3.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
Solyc06g076030.3.1	No alias	transcription factor (DOF)	0.03	Archaeplastida
Solyc06g150130.1.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
Solyc10g009360.4.1	No alias	transcription factor (DOF)	0.05	Archaeplastida
Solyc10g086440.2.1	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e000526_P001	No alias	transcription factor (DOF)	0.04	Archaeplastida
Zm00001e001988_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e002951_P002	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e004476_P002	No alias	transcription factor (DOF)	0.05	Archaeplastida
Zm00001e004809_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e005107_P001	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e010454_P001	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e011750_P002	No alias	transcription factor (DOF)	0.04	Archaeplastida
Zm00001e012824_P001	No alias	transcription factor (DOF)	0.04	Archaeplastida
Zm00001e019172_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e023218_P004	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e027411_P001	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e028042_P002	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e028672_P001	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e029641_P001	No alias	transcription factor (DOF)	0.03	Archaeplastida
Zm00001e034454_P001	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e035074_P001	No alias	transcription factor (DOF)	0.02	Archaeplastida
Zm00001e035892_P001	No alias	transcription factor (DOF)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0004594	pantothenate kinase activity	IEP	Neighborhood
MF	GO:0004733	pyridoxamine-phosphate oxidase activity	IEP	Neighborhood
MF	GO:0005215	transporter activity	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0006811	ion transport	IEP	Neighborhood
BP	GO:0006812	cation transport	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
MF	GO:0008324	cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0010181	FMN binding	IEP	Neighborhood
MF	GO:0015075	ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015077	monovalent inorganic cation transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015936	coenzyme A metabolic process	IEP	Neighborhood
BP	GO:0015937	coenzyme A biosynthetic process	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	Neighborhood
MF	GO:0016641	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Neighborhood
MF	GO:0016758	transferase activity, transferring hexosyl groups	IEP	Neighborhood
MF	GO:0022857	transmembrane transporter activity	IEP	Neighborhood
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	Neighborhood
BP	GO:0030001	metal ion transport	IEP	Neighborhood
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	Neighborhood
BP	GO:0033866	nucleoside bisphosphate biosynthetic process	IEP	Neighborhood
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	Neighborhood
BP	GO:0034030	ribonucleoside bisphosphate biosynthetic process	IEP	Neighborhood
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	Neighborhood
BP	GO:0034033	purine nucleoside bisphosphate biosynthetic process	IEP	Neighborhood
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	Neighborhood
BP	GO:0051179	localization	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	Neighborhood
BP	GO:0055085	transmembrane transport	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003851	Znf_Dof	36	97

External Links

No external refs found!

AMTR_s00006p00248860 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation