LOC_Os05g28720.1


Description : Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana (sp|q9lzp3|pp293_arath : 520.0)


Gene families : OG0000152 (Archaeplastida) Phylogenetic Tree(s): OG0000152_tree ,
OG_05_0000102 (LandPlants) Phylogenetic Tree(s): OG_05_0000102_tree ,
OG_06_0005504 (SeedPlants) Phylogenetic Tree(s): OG_06_0005504_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g28720.1
Cluster HCCA: Cluster_257

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00121040 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g77360,... 0.03 Archaeplastida
AMTR_s00033p00156340 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g80550,... 0.04 Archaeplastida
AMTR_s00105p00044870 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g71060,... 0.03 Archaeplastida
AT1G52640 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT1G77360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Archaeplastida
AT1G80550 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
AT3G49730 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 Archaeplastida
AT3G62470 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT5G14820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT5G15010 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Archaeplastida
AT5G65820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
GSVIVT01007280001 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.04 Archaeplastida
GSVIVT01008815001 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.01 Archaeplastida
GSVIVT01015982001 No alias Pentatricopeptide repeat-containing protein At1g80880,... 0.01 Archaeplastida
GSVIVT01027388001 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.01 Archaeplastida
Gb_06907 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.04 Archaeplastida
Gb_10944 No alias Pentatricopeptide repeat-containing protein At3g22670,... 0.02 Archaeplastida
Gb_11871 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.02 Archaeplastida
Gb_12501 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.02 Archaeplastida
Gb_13617 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.05 Archaeplastida
Gb_19758 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Gb_21593 No alias Pentatricopeptide repeat-containing protein At1g71060,... 0.02 Archaeplastida
Gb_22860 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.03 Archaeplastida
Gb_31784 No alias Pentatricopeptide repeat-containing protein At3g62470,... 0.02 Archaeplastida
Gb_31799 No alias Putative pentatricopeptide repeat-containing protein... 0.01 Archaeplastida
LOC_Os03g53490.1 No alias Pentatricopeptide repeat-containing protein At3g22670,... 0.01 Archaeplastida
MA_10432868g0030 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_881199g0010 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.01 Archaeplastida
MA_929381g0010 No alias OTP43 mitochondrial RNA splicing factor 0.02 Archaeplastida
Solyc01g007267.1.1 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.03 Archaeplastida
Solyc01g097130.4.1 No alias Pentatricopeptide repeat-containing protein At3g62470,... 0.04 Archaeplastida
Solyc03g116540.1.1 No alias Pentatricopeptide repeat-containing protein At1g52640,... 0.03 Archaeplastida
Solyc03g117570.3.1 No alias Pentatricopeptide repeat-containing protein At1g80880,... 0.02 Archaeplastida
Solyc04g081950.4.1 No alias Pentatricopeptide repeat-containing protein At1g20300,... 0.04 Archaeplastida
Solyc05g008330.3.1 No alias Pentatricopeptide repeat-containing protein At1g71060,... 0.02 Archaeplastida
Solyc09g082390.3.1 No alias Pentatricopeptide repeat-containing protein At3g22670,... 0.02 Archaeplastida
Solyc11g070040.3.1 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.04 Archaeplastida
Zm00001e005553_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e005655_P001 No alias Pentatricopeptide repeat-containing protein At3g22670,... 0.03 Archaeplastida
Zm00001e005758_P001 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.02 Archaeplastida
Zm00001e006773_P001 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.02 Archaeplastida
Zm00001e010274_P001 No alias Pentatricopeptide repeat-containing protein At1g20300,... 0.04 Archaeplastida
Zm00001e015617_P001 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.03 Archaeplastida
Zm00001e026896_P001 No alias Pentatricopeptide repeat-containing protein At3g62470,... 0.03 Archaeplastida
Zm00001e031478_P001 No alias Pentatricopeptide repeat-containing protein At3g62470,... 0.07 Archaeplastida
Zm00001e036197_P001 No alias Pentatricopeptide repeat-containing protein At1g71060,... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0004000 adenosine deaminase activity IEP Neighborhood
MF GO:0004665 prephenate dehydrogenase (NADP+) activity IEP Neighborhood
CC GO:0005685 U1 snRNP IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006376 mRNA splice site selection IEP Neighborhood
BP GO:0006382 adenosine to inosine editing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006570 tyrosine metabolic process IEP Neighborhood
BP GO:0006571 tyrosine biosynthetic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP Neighborhood
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP Neighborhood
MF GO:0008977 prephenate dehydrogenase (NAD+) activity IEP Neighborhood
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Neighborhood
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016553 base conversion or substitution editing IEP Neighborhood
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Neighborhood
MF GO:0019239 deaminase activity IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0030688 preribosome, small subunit precursor IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
CC GO:0031262 Ndc80 complex IEP Neighborhood
CC GO:0034457 Mpp10 complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0042274 ribosomal small subunit biogenesis IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044452 nucleolar part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051259 protein complex oligomerization IEP Neighborhood
BP GO:0051260 protein homooligomerization IEP Neighborhood
BP GO:0051315 attachment of mitotic spindle microtubules to kinetochore IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 259 286
IPR002885 Pentatricopeptide_repeat 222 251
IPR002885 Pentatricopeptide_repeat 537 565
IPR002885 Pentatricopeptide_repeat 326 355
IPR002885 Pentatricopeptide_repeat 292 319
IPR002885 Pentatricopeptide_repeat 417 476
IPR002885 Pentatricopeptide_repeat 357 406
No external refs found!