Description : Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana (sp|q9lzp3|pp293_arath : 520.0)
Gene families : OG0000152 (Archaeplastida) Phylogenetic Tree(s): OG0000152_tree ,
OG_05_0000102 (LandPlants) Phylogenetic Tree(s): OG_05_0000102_tree ,
OG_06_0005504 (SeedPlants) Phylogenetic Tree(s): OG_06_0005504_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: LOC_Os05g28720.1 | |
Cluster | HCCA: Cluster_257 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00022p00121040 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g77360,... | 0.03 | Archaeplastida | |
AMTR_s00033p00156340 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g80550,... | 0.04 | Archaeplastida | |
AMTR_s00105p00044870 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g71060,... | 0.03 | Archaeplastida | |
AT1G52640 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Archaeplastida | |
AT1G77360 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.01 | Archaeplastida | |
AT1G80550 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.05 | Archaeplastida | |
AT3G49730 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.07 | Archaeplastida | |
AT3G62470 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Archaeplastida | |
AT5G14820 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Archaeplastida | |
AT5G15010 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.06 | Archaeplastida | |
AT5G65820 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Archaeplastida | |
GSVIVT01007280001 | No alias | Pentatricopeptide repeat-containing protein At3g49730... | 0.04 | Archaeplastida | |
GSVIVT01008815001 | No alias | Pentatricopeptide repeat-containing protein At1g77360,... | 0.01 | Archaeplastida | |
GSVIVT01015982001 | No alias | Pentatricopeptide repeat-containing protein At1g80880,... | 0.01 | Archaeplastida | |
GSVIVT01027388001 | No alias | Pentatricopeptide repeat-containing protein At1g80550,... | 0.01 | Archaeplastida | |
Gb_06907 | No alias | Pentatricopeptide repeat-containing protein At1g80550,... | 0.04 | Archaeplastida | |
Gb_10944 | No alias | Pentatricopeptide repeat-containing protein At3g22670,... | 0.02 | Archaeplastida | |
Gb_11871 | No alias | Pentatricopeptide repeat-containing protein At3g49730... | 0.02 | Archaeplastida | |
Gb_12501 | No alias | Pentatricopeptide repeat-containing protein At1g77360,... | 0.02 | Archaeplastida | |
Gb_13617 | No alias | Pentatricopeptide repeat-containing protein At1g77360,... | 0.05 | Archaeplastida | |
Gb_19758 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.02 | Archaeplastida | |
Gb_21593 | No alias | Pentatricopeptide repeat-containing protein At1g71060,... | 0.02 | Archaeplastida | |
Gb_22860 | No alias | Pentatricopeptide repeat-containing protein At1g77360,... | 0.03 | Archaeplastida | |
Gb_31784 | No alias | Pentatricopeptide repeat-containing protein At3g62470,... | 0.02 | Archaeplastida | |
Gb_31799 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.01 | Archaeplastida | |
LOC_Os03g53490.1 | No alias | Pentatricopeptide repeat-containing protein At3g22670,... | 0.01 | Archaeplastida | |
MA_10432868g0030 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Archaeplastida | |
MA_881199g0010 | No alias | Pentatricopeptide repeat-containing protein At1g77360,... | 0.01 | Archaeplastida | |
MA_929381g0010 | No alias | OTP43 mitochondrial RNA splicing factor | 0.02 | Archaeplastida | |
Solyc01g007267.1.1 | No alias | Pentatricopeptide repeat-containing protein At3g49730... | 0.03 | Archaeplastida | |
Solyc01g097130.4.1 | No alias | Pentatricopeptide repeat-containing protein At3g62470,... | 0.04 | Archaeplastida | |
Solyc03g116540.1.1 | No alias | Pentatricopeptide repeat-containing protein At1g52640,... | 0.03 | Archaeplastida | |
Solyc03g117570.3.1 | No alias | Pentatricopeptide repeat-containing protein At1g80880,... | 0.02 | Archaeplastida | |
Solyc04g081950.4.1 | No alias | Pentatricopeptide repeat-containing protein At1g20300,... | 0.04 | Archaeplastida | |
Solyc05g008330.3.1 | No alias | Pentatricopeptide repeat-containing protein At1g71060,... | 0.02 | Archaeplastida | |
Solyc09g082390.3.1 | No alias | Pentatricopeptide repeat-containing protein At3g22670,... | 0.02 | Archaeplastida | |
Solyc11g070040.3.1 | No alias | Pentatricopeptide repeat-containing protein At1g77360,... | 0.04 | Archaeplastida | |
Zm00001e005553_P001 | No alias | no hits & (original description: none) | 0.03 | Archaeplastida | |
Zm00001e005655_P001 | No alias | Pentatricopeptide repeat-containing protein At3g22670,... | 0.03 | Archaeplastida | |
Zm00001e005758_P001 | No alias | Pentatricopeptide repeat-containing protein At1g77360,... | 0.02 | Archaeplastida | |
Zm00001e006773_P001 | No alias | Pentatricopeptide repeat-containing protein At1g80550,... | 0.02 | Archaeplastida | |
Zm00001e010274_P001 | No alias | Pentatricopeptide repeat-containing protein At1g20300,... | 0.04 | Archaeplastida | |
Zm00001e015617_P001 | No alias | Pentatricopeptide repeat-containing protein At1g77360,... | 0.03 | Archaeplastida | |
Zm00001e026896_P001 | No alias | Pentatricopeptide repeat-containing protein At3g62470,... | 0.03 | Archaeplastida | |
Zm00001e031478_P001 | No alias | Pentatricopeptide repeat-containing protein At3g62470,... | 0.07 | Archaeplastida | |
Zm00001e036197_P001 | No alias | Pentatricopeptide repeat-containing protein At1g71060,... | 0.02 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0002097 | tRNA wobble base modification | IEP | Neighborhood |
BP | GO:0002100 | tRNA wobble adenosine to inosine editing | IEP | Neighborhood |
MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
MF | GO:0003729 | mRNA binding | IEP | Neighborhood |
MF | GO:0004000 | adenosine deaminase activity | IEP | Neighborhood |
MF | GO:0004665 | prephenate dehydrogenase (NADP+) activity | IEP | Neighborhood |
CC | GO:0005685 | U1 snRNP | IEP | Neighborhood |
CC | GO:0005694 | chromosome | IEP | Neighborhood |
CC | GO:0005732 | small nucleolar ribonucleoprotein complex | IEP | Neighborhood |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0006364 | rRNA processing | IEP | Neighborhood |
BP | GO:0006376 | mRNA splice site selection | IEP | Neighborhood |
BP | GO:0006382 | adenosine to inosine editing | IEP | Neighborhood |
BP | GO:0006396 | RNA processing | IEP | Neighborhood |
BP | GO:0006400 | tRNA modification | IEP | Neighborhood |
BP | GO:0006570 | tyrosine metabolic process | IEP | Neighborhood |
BP | GO:0006571 | tyrosine biosynthetic process | IEP | Neighborhood |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
MF | GO:0008251 | tRNA-specific adenosine deaminase activity | IEP | Neighborhood |
BP | GO:0008608 | attachment of spindle microtubules to kinetochore | IEP | Neighborhood |
MF | GO:0008977 | prephenate dehydrogenase (NAD+) activity | IEP | Neighborhood |
BP | GO:0009073 | aromatic amino acid family biosynthetic process | IEP | Neighborhood |
BP | GO:0009095 | aromatic amino acid family biosynthetic process, prephenate pathway | IEP | Neighborhood |
BP | GO:0009987 | cellular process | IEP | Neighborhood |
BP | GO:0016043 | cellular component organization | IEP | Neighborhood |
BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
BP | GO:0016072 | rRNA metabolic process | IEP | Neighborhood |
BP | GO:0016458 | gene silencing | IEP | Neighborhood |
BP | GO:0016553 | base conversion or substitution editing | IEP | Neighborhood |
MF | GO:0016628 | oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | IEP | Neighborhood |
MF | GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | IEP | Neighborhood |
MF | GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | IEP | Neighborhood |
MF | GO:0019239 | deaminase activity | IEP | Neighborhood |
BP | GO:0022402 | cell cycle process | IEP | Neighborhood |
BP | GO:0022607 | cellular component assembly | IEP | Neighborhood |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Neighborhood |
BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | Neighborhood |
CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | Neighborhood |
CC | GO:0030684 | preribosome | IEP | Neighborhood |
CC | GO:0030688 | preribosome, small subunit precursor | IEP | Neighborhood |
BP | GO:0031047 | gene silencing by RNA | IEP | Neighborhood |
CC | GO:0031262 | Ndc80 complex | IEP | Neighborhood |
CC | GO:0034457 | Mpp10 complex | IEP | Neighborhood |
BP | GO:0034470 | ncRNA processing | IEP | Neighborhood |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:0034660 | ncRNA metabolic process | IEP | Neighborhood |
BP | GO:0042274 | ribosomal small subunit biogenesis | IEP | Neighborhood |
BP | GO:0043933 | protein-containing complex subunit organization | IEP | Neighborhood |
CC | GO:0044422 | organelle part | IEP | Neighborhood |
CC | GO:0044428 | nuclear part | IEP | Neighborhood |
CC | GO:0044446 | intracellular organelle part | IEP | Neighborhood |
CC | GO:0044452 | nucleolar part | IEP | Neighborhood |
BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
BP | GO:0051259 | protein complex oligomerization | IEP | Neighborhood |
BP | GO:0051260 | protein homooligomerization | IEP | Neighborhood |
BP | GO:0051315 | attachment of mitotic spindle microtubules to kinetochore | IEP | Neighborhood |
BP | GO:0065003 | protein-containing complex assembly | IEP | Neighborhood |
BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | Neighborhood |
BP | GO:0071840 | cellular component organization or biogenesis | IEP | Neighborhood |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
CC | GO:0097525 | spliceosomal snRNP complex | IEP | Neighborhood |
CC | GO:0120114 | Sm-like protein family complex | IEP | Neighborhood |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
BP | GO:1903047 | mitotic cell cycle process | IEP | Neighborhood |
CC | GO:1990904 | ribonucleoprotein complex | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 259 | 286 |
IPR002885 | Pentatricopeptide_repeat | 222 | 251 |
IPR002885 | Pentatricopeptide_repeat | 537 | 565 |
IPR002885 | Pentatricopeptide_repeat | 326 | 355 |
IPR002885 | Pentatricopeptide_repeat | 292 | 319 |
IPR002885 | Pentatricopeptide_repeat | 417 | 476 |
IPR002885 | Pentatricopeptide_repeat | 357 | 406 |
No external refs found! |