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  5. LOC_Os05g28730.1

LOC_Os05g28730.1


Description : RING-v-class E3 ligase


Gene families : OG0000436 (Archaeplastida) Phylogenetic Tree(s): OG0000436_tree ,
OG_05_0009096 (LandPlants) Phylogenetic Tree(s): OG_05_0009096_tree ,
OG_06_0007079 (SeedPlants) Phylogenetic Tree(s): OG_06_0007079_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g28730.1
Cluster HCCA: Cluster_331

Target Alias Description ECC score Gene Family Method Actions
AT2G01275 No alias RING/FYVE/PHD zinc finger superfamily protein 0.03 Archaeplastida
GSVIVT01011789001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Mp8g15410.1 No alias RING-v-class E3 ligase 0.02 Archaeplastida
Solyc02g091230.4.1 No alias RING-v-class E3 ligase 0.03 Archaeplastida
Solyc04g007600.4.1 No alias RING-v-class E3 ligase 0.04 Archaeplastida
Solyc08g014080.4.1 No alias RING-v-class E3 ligase 0.05 Archaeplastida
Zm00001e017493_P001 No alias RING-v-class E3 ligase 0.05 Archaeplastida
Zm00001e026209_P003 No alias RING-v-class E3 ligase 0.03 Archaeplastida
Zm00001e028572_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e031477_P002 No alias RING-v-class E3 ligase 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
BP GO:0009733 response to auxin IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 36 83
IPR022143 DUF3675 90 195
No external refs found!