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  5. AMTR_s00006p00249860

AMTR_s00006p00249860 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00006.145

Description : Protein biosynthesis.translation termination.eRF1 peptide release factor


Gene families : OG0002405 (Archaeplastida) Phylogenetic Tree(s): OG0002405_tree ,
OG_05_0002075 (LandPlants) Phylogenetic Tree(s): OG_05_0002075_tree ,
OG_06_0001938 (SeedPlants) Phylogenetic Tree(s): OG_06_0001938_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00006p00249860
Cluster HCCA: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
LOC_Os03g49580.1 No alias eRF1 peptide release factor 0.03 Archaeplastida
LOC_Os05g31020.1 No alias eRF1 peptide release factor 0.04 Archaeplastida
Pp3c26_1110V3.1 No alias eukaryotic release factor 1-3 0.02 Archaeplastida
Solyc05g055210.3.1 No alias No annotation 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR005141 eRF1_2 144 278
IPR005140 eRF1_1_Pelota 7 139
IPR005142 eRF1_3 281 418
No external refs found!