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  5. LOC_Os05g29676.1

LOC_Os05g29676.1


Description : RING-H2-class E3 ligase


Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0083064 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0071994 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g29676.1
Cluster HCCA: Cluster_294

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00161170 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00025p00229930 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00039p00223340 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00044p00211560 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AMTR_s00059p00176670 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
AMTR_s00077p00074350 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
AMTR_s00102p00069840 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.06 Archaeplastida
AMTR_s00129p00065710 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AT1G04360 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT1G53010 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT2G17730 NIP2 NEP-interacting protein 2 0.02 Archaeplastida
AT3G60966 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT4G10160 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT4G15975 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT4G35840 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT5G27420 ATL31, CNI1 carbon/nitrogen insensitive 1 0.02 Archaeplastida
AT5G42200 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Cpa|evm.model.tig00020876.18 No alias No description available 0.01 Archaeplastida
Cre11.g476250 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01009096001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
GSVIVT01009098001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01012018001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01012022001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01020210001 No alias No description available 0.04 Archaeplastida
GSVIVT01020665001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01027769001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01032684001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Gb_05386 No alias RHA2 signal transducer of abscisic acid perception 0.03 Archaeplastida
Gb_14778 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Gb_14788 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Gb_23066 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_26582 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Gb_40644 No alias no hits & (original description: none) 0.06 Archaeplastida
LOC_Os02g36330.1 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
LOC_Os04g37740.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os05g29710.1 No alias RING-H2-class E3 ligase 0.08 Archaeplastida
LOC_Os06g09310.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os06g34530.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os12g02210.1 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_10200587g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_227897g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_391590g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_402876g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_479316g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_6934973g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_77628g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_85088g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Mp4g15970.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Mp6g19130.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c22_17730V3.1 No alias RING/U-box superfamily protein 0.03 Archaeplastida
Pp3c26_11650V3.1 No alias TOXICOS EN LEVADURA 2 0.02 Archaeplastida
Smo417984 No alias No description available 0.03 Archaeplastida
Smo441685 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Solyc01g095810.3.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc02g083660.1.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc04g009780.1.1 No alias Putative RING-H2 finger protein ATL71 OS=Arabidopsis... 0.05 Archaeplastida
Solyc04g074790.3.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Solyc04g082690.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc05g010170.2.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc05g010175.1.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc06g007230.2.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Solyc06g051250.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc10g009487.1.1 No alias RING-H2 finger protein ATL20 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc10g081790.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc11g005280.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc11g005300.2.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc11g007530.2.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc12g094690.1.1 No alias RING-H2 finger protein ATL8 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e000398_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e019779_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e023238_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e023515_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e030136_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e031439_P001 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e034025_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e034421_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0010333 terpene synthase activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016835 carbon-oxygen lyase activity IEP Neighborhood
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 124 167
No external refs found!