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  5. LOC_Os05g30140.1

LOC_Os05g30140.1


Description : SR30/34 RNA splicing factor


Gene families : OG0001375 (Archaeplastida) Phylogenetic Tree(s): OG0001375_tree ,
OG_05_0001509 (LandPlants) Phylogenetic Tree(s): OG_05_0001509_tree ,
OG_06_0001416 (SeedPlants) Phylogenetic Tree(s): OG_06_0001416_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g30140.1
Cluster HCCA: Cluster_166

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01027997001 No alias RNA processing.RNA splicing.spliceosome-associated... 0.03 Archaeplastida
Solyc03g082380.4.1 No alias SR30/34 RNA splicing factor 0.04 Archaeplastida
Solyc06g009060.4.1 No alias SR30/34 RNA splicing factor 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005319 lipid transporter activity IEP Neighborhood
MF GO:0005548 phospholipid transporter activity IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0007009 plasma membrane organization IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
BP GO:0017121 phospholipid scrambling IEP Neighborhood
MF GO:0017128 phospholipid scramblase activity IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0061024 membrane organization IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
BP GO:0097035 regulation of membrane lipid distribution IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 9 76
IPR000504 RRM_dom 110 172
No external refs found!