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  5. LOC_Os05g30800.1

LOC_Os05g30800.1


Description : regulatory component RPN11 of 26S proteasome


Gene families : OG0003204 (Archaeplastida) Phylogenetic Tree(s): OG0003204_tree ,
OG_05_0003461 (LandPlants) Phylogenetic Tree(s): OG_05_0003461_tree ,
OG_06_0006004 (SeedPlants) Phylogenetic Tree(s): OG_06_0006004_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g30800.1
Cluster HCCA: Cluster_318

Target Alias Description ECC score Gene Family Method Actions
AT5G23540 No alias Mov34/MPN/PAD-1 family protein 0.04 Archaeplastida
Cpa|evm.model.tig00001542.22 No alias Protein degradation.26S proteasome.regulatory... 0.02 Archaeplastida
Cre01.g011500 No alias Protein degradation.26S proteasome.regulatory... 0.06 Archaeplastida
GSVIVT01009529001 No alias Protein degradation.26S proteasome.regulatory... 0.03 Archaeplastida
Gb_24814 No alias regulatory component RPN11 of 26S proteasome 0.02 Archaeplastida
MA_10428869g0010 No alias regulatory component RPN11 of 26S proteasome 0.03 Archaeplastida
MA_10429431g0020 No alias regulatory component RPN11 of 26S proteasome 0.03 Archaeplastida
Mp5g01180.1 No alias regulatory component RPN11 of 26S proteasome 0.02 Archaeplastida
Mp5g17390.1 No alias regulatory component RPN11 of 26S proteasome 0.03 Archaeplastida
Pp3c4_8970V3.1 No alias Mov34/MPN/PAD-1 family protein 0.03 Archaeplastida
Solyc04g079200.3.1 No alias regulatory component RPN11 of 26S proteasome 0.04 Archaeplastida
Zm00001e017298_P002 No alias regulatory component RPN11 of 26S proteasome 0.03 Archaeplastida
Zm00001e025532_P003 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005787 signal peptidase complex IEP Neighborhood
CC GO:0005789 endoplasmic reticulum membrane IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006465 signal peptide processing IEP Neighborhood
BP GO:0006497 protein lipidation IEP Neighborhood
BP GO:0006505 GPI anchor metabolic process IEP Neighborhood
BP GO:0006506 GPI anchor biosynthetic process IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006643 membrane lipid metabolic process IEP Neighborhood
BP GO:0006650 glycerophospholipid metabolic process IEP Neighborhood
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Neighborhood
BP GO:0006664 glycolipid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0008654 phospholipid biosynthetic process IEP Neighborhood
BP GO:0009247 glycolipid biosynthetic process IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016073 snRNA metabolic process IEP Neighborhood
BP GO:0016180 snRNA processing IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
BP GO:0016556 mRNA modification IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
CC GO:0030176 integral component of endoplasmic reticulum membrane IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
CC GO:0031227 intrinsic component of endoplasmic reticulum membrane IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034472 snRNA 3'-end processing IEP Neighborhood
BP GO:0034477 U6 snRNA 3'-end processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
CC GO:0035145 exon-exon junction complex IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0043628 ncRNA 3'-end processing IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045017 glycerolipid biosynthetic process IEP Neighborhood
BP GO:0046467 membrane lipid biosynthetic process IEP Neighborhood
BP GO:0046474 glycerophospholipid biosynthetic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046486 glycerolipid metabolic process IEP Neighborhood
BP GO:0046488 phosphatidylinositol metabolic process IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0080009 mRNA methylation IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1903509 liposaccharide metabolic process IEP Neighborhood
CC GO:1905368 peptidase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000555 JAMM/MPN+_dom 25 136
IPR024969 Rpn11/EIF3F_C 171 289
No external refs found!