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  5. AMTR_s00006p00257350

AMTR_s00006p00257350 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00006.198

Description : RNA processing.organelle machineries.RNA editing.mitochondrial RNA editing.MEF13 RNA editing factor


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00006p00257350
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00138570 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
AMTR_s00003p00222920 No alias Putative pentatricopeptide repeat-containing protein... 0.01 Archaeplastida
AMTR_s00010p00260120 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g74600,... 0.03 Archaeplastida
AMTR_s00016p00252350 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g22690... 0.01 Archaeplastida
AMTR_s00019p00238380 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g35130,... 0.02 Archaeplastida
AMTR_s00029p00042600 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33680... 0.01 Archaeplastida
AMTR_s00061p00035580 No alias Pentatricopeptide repeat-containing protein At5g44230... 0.02 Archaeplastida
AMTR_s00127p00016340 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g32430,... 0.04 Archaeplastida
AMTR_s00276p00017800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g29760,... 0.03 Archaeplastida
AMTR_s00439p00010860 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g34400... 0.02 Archaeplastida
LOC_Os03g63560.1 No alias OTP70 plastidial RNA splicing factor 0.01 Archaeplastida
LOC_Os07g39910.1 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.02 Archaeplastida
LOC_Os11g01836.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_159535g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.01 Archaeplastida
Pp3c27_5540V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
Solyc02g079260.2.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Solyc02g084830.4.1 No alias Pentatricopeptide repeat-containing protein At5g44230... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001505 regulation of neurotransmitter levels IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004190 aspartic-type endopeptidase activity IEP Neighborhood
MF GO:0004372 glycine hydroxymethyltransferase activity IEP Neighborhood
MF GO:0004497 monooxygenase activity IEP Neighborhood
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006544 glycine metabolic process IEP Neighborhood
BP GO:0006563 L-serine metabolic process IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008883 glutamyl-tRNA reductase activity IEP Neighborhood
BP GO:0016032 viral process IEP Neighborhood
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Neighborhood
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Neighborhood
BP GO:0042133 neurotransmitter metabolic process IEP Neighborhood
BP GO:0044403 symbiont process IEP Neighborhood
BP GO:0044419 interspecies interaction between organisms IEP Neighborhood
MF GO:0050660 flavin adenine dinucleotide binding IEP Neighborhood
MF GO:0050661 NADP binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
BP GO:0051704 multi-organism process IEP Neighborhood
MF GO:0070001 aspartic-type peptidase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 186 212
IPR002885 Pentatricopeptide_repeat 214 243
IPR002885 Pentatricopeptide_repeat 113 140
IPR002885 Pentatricopeptide_repeat 489 513
IPR002885 Pentatricopeptide_repeat 52 79
IPR002885 Pentatricopeptide_repeat 589 616
IPR002885 Pentatricopeptide_repeat 316 345
IPR002885 Pentatricopeptide_repeat 388 411
IPR002885 Pentatricopeptide_repeat 82 107
IPR002885 Pentatricopeptide_repeat 514 561
IPR002885 Pentatricopeptide_repeat 414 461
No external refs found!