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  5. LOC_Os05g38640.1

LOC_Os05g38640.1


Description : histone (H2A)


Gene families : OG0000174 (Archaeplastida) Phylogenetic Tree(s): OG0000174_tree ,
OG_05_0000204 (LandPlants) Phylogenetic Tree(s): OG_05_0000204_tree ,
OG_06_0000166 (SeedPlants) Phylogenetic Tree(s): OG_06_0000166_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g38640.1
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00221900 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
AT1G08880 GAMMA-H2AX,... Histone superfamily protein 0.03 Archaeplastida
AT5G59870 HTA6 histone H2A 6 0.02 Archaeplastida
Cre06.g264750 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g264950 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g265350 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g266700 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g268050 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g268300 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g271350 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g273900 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g274200 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g274800 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g275850 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g276500 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre06.g276950 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre12.g504500 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre12.g504750 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre12.g505550 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre12.g506250 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre13.g570100 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre17.g708550 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre17.g709200 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre17.g710400 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre17.g711700 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre17.g713400 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Cre17.g714500 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
GSVIVT01014580001 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Gb_06384 No alias histone (H2A) 0.04 Archaeplastida
Gb_07070 No alias histone (H2A) 0.03 Archaeplastida
Pp3c5_1791V3.1 No alias histone H2A 10 0.03 Archaeplastida
Solyc06g084430.4.1 No alias histone (H2A) 0.03 Archaeplastida
Solyc09g074300.1.1 No alias histone (H2A) 0.03 Archaeplastida
Solyc09g082710.3.1 No alias histone (H2A) 0.02 Archaeplastida
Solyc12g005270.2.1 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e010515_P001 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e010516_P001 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e011643_P001 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e012144_P001 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e020483_P001 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e033014_P001 No alias histone (H2A) 0.04 Archaeplastida
Zm00001e035183_P002 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e038465_P002 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e039735_P001 No alias histone (H2A) 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005875 microtubule associated complex IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
CC GO:0030286 dynein complex IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 23 100
IPR032454 Histone_H2A_C 103 136
No external refs found!