LOC_Os05g38640.1

Description : histone (H2A)

Gene families : OG0000174 (Archaeplastida) Phylogenetic Tree(s): OG0000174_tree ,
OG_05_0000204 (LandPlants) Phylogenetic Tree(s): OG_05_0000204_tree ,
OG_06_0000166 (SeedPlants) Phylogenetic Tree(s): OG_06_0000166_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os05g38640.1
Cluster	HCCA: Cluster_48

Target	Alias	Description	ECC score	Gene Family Method	Actions
AMTR_s00055p00221900	evm_27.TU.AmTr_v1...	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
AT1G08880	GAMMA-H2AX,...	Histone superfamily protein	0.03	Archaeplastida
AT5G59870	HTA6	histone H2A 6	0.02	Archaeplastida
Cre06.g264750	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
Cre06.g264950	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
Cre06.g265350	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
Cre06.g266700	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
Cre06.g268050	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
Cre06.g268300	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
Cre06.g271350	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
Cre06.g273900	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
Cre06.g274200	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
Cre06.g274800	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
Cre06.g275850	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
Cre06.g276500	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
Cre06.g276950	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
Cre12.g504500	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
Cre12.g504750	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
Cre12.g505550	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
Cre12.g506250	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
Cre13.g570100	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
Cre17.g708550	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
Cre17.g709200	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
Cre17.g710400	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
Cre17.g711700	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida	Search (advanced) BLAST Help Tutorial Contact Jump to ... Profile Networks ECC Annotation Links Home Species Oryza sativa Sequence LOC_Os01g61670.1 LOC_Os01g61670.1 Description : no hits & (original description: none)
Cre17.g713400	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
Cre17.g714500	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
GSVIVT01014580001	No alias	Chromatin organisation.histones.H2A-type histone	0.03	Archaeplastida
Gb_06384	No alias	histone (H2A)	0.04	Archaeplastida
Gb_07070	No alias	histone (H2A)	0.03	Archaeplastida
Pp3c5_1791V3.1	No alias	histone H2A 10	0.03	Archaeplastida
Solyc06g084430.4.1	No alias	histone (H2A)	0.03	Archaeplastida
Solyc09g074300.1.1	No alias	histone (H2A)	0.03	Archaeplastida
Solyc09g082710.3.1	No alias	histone (H2A)	0.02	Archaeplastida
Solyc12g005270.2.1	No alias	histone (H2A)	0.03	Archaeplastida
Zm00001e010515_P001	No alias	histone (H2A)	0.03	Archaeplastida
Zm00001e010516_P001	No alias	histone (H2A)	0.03	Archaeplastida
Zm00001e011643_P001	No alias	histone (H2A)	0.03	Archaeplastida
Zm00001e012144_P001	No alias	histone (H2A)	0.03	Archaeplastida
Zm00001e020483_P001	No alias	histone (H2A)	0.03	Archaeplastida
Zm00001e033014_P001	No alias	histone (H2A)	0.04	Archaeplastida
Zm00001e035183_P002	No alias	histone (H2A)	0.03	Archaeplastida
Zm00001e038465_P002	No alias	histone (H2A)	0.03	Archaeplastida
Zm00001e039735_P001	No alias	histone (H2A)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044427	chromosomal part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005875	microtubule associated complex	IEP	Neighborhood
BP	GO:0007017	microtubule-based process	IEP	Neighborhood
CC	GO:0030286	dynein complex	IEP	Neighborhood
CC	GO:0044430	cytoskeletal part	IEP	Neighborhood
CC	GO:1902494	catalytic complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR007125	Histone_H2A/H2B/H3	23	100
IPR032454	Histone_H2A_C	103	136

External Links

No external refs found!

LOC_Os05g38640.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

LOC_Os01g61670.1

Functional Annotation