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  5. LOC_Os05g38810.1

LOC_Os05g38810.1


Description : no hits & (original description: none)


Gene families : OG0000897 (Archaeplastida) Phylogenetic Tree(s): OG0000897_tree ,
OG_05_0001976 (LandPlants) Phylogenetic Tree(s): OG_05_0001976_tree ,
OG_06_0002181 (SeedPlants) Phylogenetic Tree(s): OG_06_0002181_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g38810.1
Cluster HCCA: Cluster_174

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00208300 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AMTR_s00058p00210830 evm_27.TU.AmTr_v1... No description available 0.05 Archaeplastida
AMTR_s00095p00129820 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AT3G05430 No alias Tudor/PWWP/MBT superfamily protein 0.03 Archaeplastida
AT3G27860 No alias Tudor/PWWP/MBT superfamily protein 0.03 Archaeplastida
AT3G54760 No alias dentin sialophosphoprotein-related 0.1 Archaeplastida
AT5G27650 No alias Tudor/PWWP/MBT superfamily protein 0.07 Archaeplastida
AT5G40340 No alias Tudor/PWWP/MBT superfamily protein 0.06 Archaeplastida
Cpa|evm.model.tig00000076.92 No alias No description available 0.01 Archaeplastida
Cpa|evm.model.tig00020685.51 No alias No description available 0.01 Archaeplastida
Cre06.g270700 No alias No description available 0.02 Archaeplastida
GSVIVT01016344001 No alias Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana 0.07 Archaeplastida
GSVIVT01025624001 No alias No description available 0.04 Archaeplastida
GSVIVT01032455001 No alias Serine/threonine-protein kinase ATM OS=Arabidopsis thaliana 0.02 Archaeplastida
Gb_40891 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10197194g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc04g049950.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e027258_P002 No alias no hits & (original description: none) 0.17 Archaeplastida
Zm00001e031849_P002 No alias no hits & (original description: none) 0.17 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0002097 tRNA wobble base modification IEP Neighborhood
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003724 RNA helicase activity IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0004000 adenosine deaminase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005685 U1 snRNP IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006376 mRNA splice site selection IEP Neighborhood
BP GO:0006382 adenosine to inosine editing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP Neighborhood
BP GO:0009891 positive regulation of biosynthetic process IEP Neighborhood
BP GO:0009893 positive regulation of metabolic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010628 positive regulation of gene expression IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016553 base conversion or substitution editing IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Neighborhood
MF GO:0019239 deaminase activity IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0030688 preribosome, small subunit precursor IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
CC GO:0031262 Ndc80 complex IEP Neighborhood
BP GO:0031325 positive regulation of cellular metabolic process IEP Neighborhood
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0032784 regulation of DNA-templated transcription, elongation IEP Neighborhood
BP GO:0032786 positive regulation of DNA-templated transcription, elongation IEP Neighborhood
BP GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034243 regulation of transcription elongation from RNA polymerase II promoter IEP Neighborhood
CC GO:0034457 Mpp10 complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0042274 ribosomal small subunit biogenesis IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044452 nucleolar part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045893 positive regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0045944 positive regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0048522 positive regulation of cellular process IEP Neighborhood
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051254 positive regulation of RNA metabolic process IEP Neighborhood
BP GO:0051315 attachment of mitotic spindle microtubules to kinetochore IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1902680 positive regulation of RNA biosynthetic process IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000313 PWWP_dom 248 335
No external refs found!