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  5. LOC_Os05g39670.1

LOC_Os05g39670.1


Description : B-G-class Rab-GDF protein


Gene families : OG0000503 (Archaeplastida) Phylogenetic Tree(s): OG0000503_tree ,
OG_05_0000469 (LandPlants) Phylogenetic Tree(s): OG_05_0000469_tree ,
OG_06_0001439 (SeedPlants) Phylogenetic Tree(s): OG_06_0001439_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g39670.1
Cluster HCCA: Cluster_153

Target Alias Description ECC score Gene Family Method Actions
AT1G55640 PRA1.G1 prenylated RAB acceptor 1.G1 0.03 Archaeplastida
Gb_20840 No alias B-G-class Rab-GDF protein 0.02 Archaeplastida
MA_10426038g0020 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp1g23710.1 No alias B-G-class Rab-GDF protein 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR004895 Prenylated_rab_accept_PRA1 54 196
No external refs found!