LOC_Os05g39960.1

Description : component RPS26 of SSU proteome

Gene families : OG0002687 (Archaeplastida) Phylogenetic Tree(s): OG0002687_tree ,
OG_05_0002903 (LandPlants) Phylogenetic Tree(s): OG_05_0002903_tree ,
OG_06_0002971 (SeedPlants) Phylogenetic Tree(s): OG_06_0002971_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os05g39960.1
Cluster	HCCA: Cluster_140

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00077p00042770	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.17	Archaeplastida
AT2G40510	No alias	Ribosomal protein S26e family protein	0.28	Archaeplastida
AT2G40590	No alias	Ribosomal protein S26e family protein	0.14	Archaeplastida
AT3G56340	No alias	Ribosomal protein S26e family protein	0.26	Archaeplastida
Cpa\|evm.model.tig00001486.9	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.15	Archaeplastida
Cre16.g682300	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.43	Archaeplastida
GSVIVT01024576001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.1	Archaeplastida
GSVIVT01032696001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.37	Archaeplastida
Gb_00995	No alias	component RPS26 of SSU proteome	0.14	Archaeplastida
Gb_00996	No alias	component RPS26 of SSU proteome	0.04	Archaeplastida
MA_114136g0010	No alias	component RPS26 of SSU proteome	0.16	Archaeplastida
MA_74546g0010	No alias	component RPS26 of SSU proteome	0.1	Archaeplastida
Mp2g06210.1	No alias	component RPS26 of SSU proteome	0.08	Archaeplastida
Pp3c16_9210V3.1	No alias	Ribosomal protein S26e family protein	0.31	Archaeplastida
Pp3c5_16070V3.1	No alias	Ribosomal protein S26e family protein	0.26	Archaeplastida
Pp3c6_8910V3.1	No alias	Ribosomal protein S26e family protein	0.29	Archaeplastida
Smo77589	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.17	Archaeplastida
Solyc04g008810.3.1	No alias	component RPS26 of SSU proteome	0.41	Archaeplastida
Solyc06g007470.3.1	No alias	component RPS26 of SSU proteome	0.06	Archaeplastida
Zm00001e011780_P001	No alias	component RPS26 of SSU proteome	0.38	Archaeplastida
Zm00001e027298_P001	No alias	component RPS26 of SSU proteome	0.26	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003746	translation elongation factor activity	IEP	Neighborhood
BP	GO:0006414	translational elongation	IEP	Neighborhood
BP	GO:0006605	protein targeting	IEP	Neighborhood
BP	GO:0006612	protein targeting to membrane	IEP	Neighborhood
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	Neighborhood
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	Neighborhood
MF	GO:0008312	7S RNA binding	IEP	Neighborhood
CC	GO:0015934	large ribosomal subunit	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
BP	GO:0033365	protein localization to organelle	IEP	Neighborhood
BP	GO:0034613	cellular protein localization	IEP	Neighborhood
CC	GO:0044391	ribosomal subunit	IEP	Neighborhood
BP	GO:0045047	protein targeting to ER	IEP	Neighborhood
CC	GO:0048500	signal recognition particle	IEP	Neighborhood
BP	GO:0070727	cellular macromolecule localization	IEP	Neighborhood
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	Neighborhood
BP	GO:0072594	establishment of protein localization to organelle	IEP	Neighborhood
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	Neighborhood
BP	GO:0072657	protein localization to membrane	IEP	Neighborhood
BP	GO:0090150	establishment of protein localization to membrane	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000892	Ribosomal_S26e	1	106

External Links

No external refs found!

LOC_Os05g39960.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation