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  5. AMTR_s00006p00261060

AMTR_s00006p00261060 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00006.226

Description : Pentatricopeptide repeat-containing protein At3g49710 OS=Arabidopsis thaliana


Gene families : OG0011485 (Archaeplastida) Phylogenetic Tree(s): OG0011485_tree ,
OG_05_0025984 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0024315 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00006p00261060
Cluster HCCA: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00137p00067410 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g49710... 0.03 Archaeplastida
GSVIVT01002530001 No alias Pentatricopeptide repeat-containing protein At3g49710... 0.04 Archaeplastida
Gb_25582 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Gb_31795 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
MA_7379g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Solyc01g102690.4.1 No alias Pentatricopeptide repeat-containing protein At3g49710... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 317 347
IPR002885 Pentatricopeptide_repeat 216 246
IPR002885 Pentatricopeptide_repeat 188 213
IPR002885 Pentatricopeptide_repeat 88 111
IPR002885 Pentatricopeptide_repeat 118 146
No external refs found!