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  5. LOC_Os05g40320.1

LOC_Os05g40320.1


Description : Pentatricopeptide repeat-containing protein At1g11900 OS=Arabidopsis thaliana (sp|q5biv3|ppr35_arath : 221.0)


Gene families : OG0011438 (Archaeplastida) Phylogenetic Tree(s): OG0011438_tree ,
OG_05_0011302 (LandPlants) Phylogenetic Tree(s): OG_05_0011302_tree ,
OG_06_0011220 (SeedPlants) Phylogenetic Tree(s): OG_06_0011220_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g40320.1
Cluster HCCA: Cluster_219

Target Alias Description ECC score Gene Family Method Actions
AT1G11900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0030145 manganese ion binding IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046873 metal ion transmembrane transporter activity IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 266 311
IPR002885 Pentatricopeptide_repeat 234 254
No external refs found!