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  5. AMTR_s00006p00262710

AMTR_s00006p00262710 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00006.243

Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.BBX/CONSTANS transcription factor


Gene families : OG0000859 (Archaeplastida) Phylogenetic Tree(s): OG0000859_tree ,
OG_05_0001138 (LandPlants) Phylogenetic Tree(s): OG_05_0001138_tree ,
OG_06_0001151 (SeedPlants) Phylogenetic Tree(s): OG_06_0001151_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00006p00262710
Cluster HCCA: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
AT3G02380 COL2, ATCOL2 CONSTANS-like 2 0.09 Archaeplastida
AT5G15850 COL1, ATCOL1 CONSTANS-like 1 0.08 Archaeplastida
AT5G24930 ATCOL4, COL4 CONSTANS-like 4 0.04 Archaeplastida
AT5G57660 ATCOL5, COL5 CONSTANS-like 5 0.04 Archaeplastida
Cre06.g278159 No alias Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana 0.01 Archaeplastida
Cre12.g534100 No alias No description available 0.02 Archaeplastida
GSVIVT01029107001 No alias Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana 0.05 Archaeplastida
GSVIVT01036037001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.05 Archaeplastida
GSVIVT01036499001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.08 Archaeplastida
Gb_41704 No alias transcription factor (BBX-CO) 0.04 Archaeplastida
LOC_Os02g08150.1 No alias Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os02g39710.1 No alias transcription factor (BBX-CO) 0.06 Archaeplastida
LOC_Os06g44450.1 No alias Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os08g15050.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os10g41100.1 No alias Transcription factor GHD7 OS=Oryza sativa subsp.... 0.03 Archaeplastida
MA_54929g0010 No alias transcription factor (BBX-CO) 0.04 Archaeplastida
Mp8g13470.1 No alias transcription factor (BBX-CO) 0.02 Archaeplastida
Pp3c7_25600V3.1 No alias CONSTANS-like 4 0.02 Archaeplastida
Smo185898 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.05 Archaeplastida
Solyc02g089540.3.1 No alias transcription factor (BBX-CO) 0.03 Archaeplastida
Solyc07g006630.4.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e002319_P001 No alias Transcription factor GHD7 OS=Oryza sativa subsp.... 0.06 Archaeplastida
Zm00001e007691_P001 No alias transcription factor (BBX-CO) 0.04 Archaeplastida
Zm00001e013804_P001 No alias Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e021565_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e037706_P002 No alias Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e037873_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e041152_P001 No alias transcription factor (BBX-CO) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005622 intracellular IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006814 sodium ion transport IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
MF GO:0015035 protein disulfide oxidoreductase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Neighborhood
InterPro domains Description Start Stop
IPR000315 Znf_B-box 66 108
IPR010402 CCT_domain 309 352
No external refs found!