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  5. LOC_Os05g44070.1

LOC_Os05g44070.1


Description : A-class RAB GTPase


Gene families : OG0000173 (Archaeplastida) Phylogenetic Tree(s): OG0000173_tree ,
OG_05_0000161 (LandPlants) Phylogenetic Tree(s): OG_05_0000161_tree ,
OG_06_0000127 (SeedPlants) Phylogenetic Tree(s): OG_06_0000127_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g44070.1
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
AT1G16920 ATRABA1B, RAB11, RABA1b RAB GTPase homolog A1B 0.02 Archaeplastida
AT1G73640 RABA6a, AtRABA6a RAB GTPase homolog A6A 0.05 Archaeplastida
Cpa|evm.model.tig00020961.97 No alias Vesicle trafficking.regulation of membrane tethering and... 0.01 Archaeplastida
Cre03.g189250 No alias Vesicle trafficking.regulation of membrane tethering and... 0.01 Archaeplastida
GSVIVT01020651001 No alias Ras-related protein RABA1e OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01021253001 No alias Vesicle trafficking.regulation of membrane tethering and... 0.03 Archaeplastida
Gb_03447 No alias A-class RAB GTPase 0.04 Archaeplastida
Gb_12544 No alias A-class RAB GTPase 0.03 Archaeplastida
Gb_37703 No alias A-class RAB GTPase 0.03 Archaeplastida
MA_109703g0010 No alias A-class RAB GTPase 0.03 Archaeplastida
MA_59492g0010 No alias A-class RAB GTPase 0.03 Archaeplastida
Pp3c14_15250V3.1 No alias RAB GTPase homolog A2B 0.03 Archaeplastida
Pp3c14_15310V3.1 No alias RAB GTPase homolog A2B 0.03 Archaeplastida
Pp3c2_10280V3.1 No alias RAB GTPase homolog A2B 0.03 Archaeplastida
Smo146310 No alias Vesicle trafficking.regulation of membrane tethering and... 0.02 Archaeplastida
Smo158820 No alias Vesicle trafficking.regulation of membrane tethering and... 0.03 Archaeplastida
Solyc02g072180.3.1 No alias A-class RAB GTPase 0.06 Archaeplastida
Solyc07g053480.4.1 No alias A-class RAB GTPase 0.04 Archaeplastida
Solyc10g045550.2.1 No alias A-class RAB GTPase 0.06 Archaeplastida
Zm00001e000673_P001 No alias A-class RAB GTPase 0.04 Archaeplastida
Zm00001e031368_P002 No alias A-class RAB GTPase 0.03 Archaeplastida
Zm00001e032148_P001 No alias A-class RAB GTPase 0.04 Archaeplastida
Zm00001e037250_P001 No alias A-class RAB GTPase 0.03 Archaeplastida
Zm00001e038828_P001 No alias A-class RAB GTPase 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity IEP Neighborhood
MF GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
MF GO:0005484 SNAP receptor activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006072 glycerol-3-phosphate metabolic process IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006621 protein retention in ER lumen IEP Neighborhood
BP GO:0006631 fatty acid metabolic process IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Neighborhood
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
BP GO:0032507 maintenance of protein location in cell IEP Neighborhood
BP GO:0032787 monocarboxylic acid metabolic process IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044255 cellular lipid metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0045185 maintenance of protein location IEP Neighborhood
BP GO:0046168 glycerol-3-phosphate catabolic process IEP Neighborhood
MF GO:0046923 ER retention sequence binding IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0051235 maintenance of location IEP Neighborhood
BP GO:0051651 maintenance of location in cell IEP Neighborhood
BP GO:0052646 alditol phosphate metabolic process IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0072595 maintenance of protein localization in organelle IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1901136 carbohydrate derivative catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001806 Small_GTPase 19 179
No external refs found!