LOC_Os05g44400.1

Description : transcription factor (GATA)

Gene families : OG0000094 (Archaeplastida) Phylogenetic Tree(s): OG0000094_tree ,
OG_05_0000055 (LandPlants) Phylogenetic Tree(s): OG_05_0000055_tree ,
OG_06_0000244 (SeedPlants) Phylogenetic Tree(s): OG_06_0000244_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os05g44400.1
Cluster	HCCA: Cluster_160

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00057p00121410	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
AT2G18380	GATA20	GATA transcription factor 20	0.03	Archaeplastida
AT2G28340	GATA13	GATA transcription factor 13	0.02	Archaeplastida
AT2G45050	GATA2	GATA transcription factor 2	0.07	Archaeplastida
AT3G20750	GATA29	GATA transcription factor 29	0.03	Archaeplastida
AT3G45170	GATA14	GATA transcription factor 14	0.02	Archaeplastida
AT3G50870	HAN, MNP, GATA18	GATA type zinc finger transcription factor family protein	0.03	Archaeplastida
AT3G54810	BME3-ZF, BME3, GATA8	Plant-specific GATA-type zinc finger transcription...	0.03	Archaeplastida
AT4G16141	No alias	GATA type zinc finger transcription factor family protein	0.03	Archaeplastida
AT4G36240	GATA7	GATA transcription factor 7	0.03	Archaeplastida
AT5G26930	GATA23	GATA transcription factor 23	0.03	Archaeplastida
AT5G49300	GATA16	GATA transcription factor 16	0.03	Archaeplastida
Cre06.g266950	No alias	No description available	0.02	Archaeplastida
GSVIVT01016265001	No alias	GATA transcription factor 8 OS=Arabidopsis thaliana	0.04	Archaeplastida
GSVIVT01035614001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
Gb_06864	No alias	transcription factor (GATA)	0.03	Archaeplastida
Gb_24250	No alias	transcription factor (GATA)	0.03	Archaeplastida
LOC_Os03g05160.1	No alias	transcription factor (GATA)	0.05	Archaeplastida
LOC_Os10g40810.1	No alias	transcription factor (GATA)	0.04	Archaeplastida
MA_92522g0010	No alias	transcription factor (GATA)	0.02	Archaeplastida
Smo69510	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
Solyc01g110310.3.1	No alias	transcription factor (GATA)	0.02	Archaeplastida
Solyc02g062760.4.1	No alias	transcription factor (GATA)	0.02	Archaeplastida
Solyc05g056120.3.1	No alias	transcription factor (GATA)	0.03	Archaeplastida
Solyc06g075140.3.1	No alias	transcription factor (GATA)	0.02	Archaeplastida
Solyc08g066510.3.1	No alias	transcription factor (GATA)	0.07	Archaeplastida
Solyc09g075610.3.1	No alias	transcription factor (GATA)	0.02	Archaeplastida
Solyc10g018560.2.1	No alias	transcription factor (GATA)	0.06	Archaeplastida
Zm00001e015260_P001	No alias	transcription factor (GATA)	0.02	Archaeplastida
Zm00001e018438_P001	No alias	transcription factor (GATA)	0.03	Archaeplastida
Zm00001e020243_P001	No alias	transcription factor (GATA)	0.05	Archaeplastida
Zm00001e023650_P003	No alias	transcription factor (GATA)	0.03	Archaeplastida
Zm00001e026601_P001	No alias	transcription factor (GATA)	0.03	Archaeplastida
Zm00001e029060_P002	No alias	transcription factor (GATA)	0.07	Archaeplastida
Zm00001e032513_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e039467_P001	No alias	transcription factor (GATA)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0009733	response to auxin	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
MF	GO:0042910	xenobiotic transmembrane transporter activity	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000679	Znf_GATA	255	288

External Links

No external refs found!

LOC_Os05g44400.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation