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  5. LOC_Os05g46520.1

LOC_Os05g46520.1


Description : Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana (sp|q94aj5|pglr5_arath : 283.0) & Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase(50.3.2 : 172.6)


Gene families : OG0000096 (Archaeplastida) Phylogenetic Tree(s): OG0000096_tree ,
OG_05_0015656 (LandPlants) Phylogenetic Tree(s): OG_05_0015656_tree ,
OG_06_0014067 (SeedPlants) Phylogenetic Tree(s): OG_06_0014067_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g46520.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00197210 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.01 Archaeplastida
AMTR_s00003p00198650 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.01 Archaeplastida
AMTR_s00019p00031370 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.01 Archaeplastida
AMTR_s00066p00135670 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.01 Archaeplastida
AMTR_s00074p00182020 evm_27.TU.AmTr_v1... No description available 0.01 Archaeplastida
AMTR_s00085p00112760 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and... 0.05 Archaeplastida
AMTR_s00103p00121270 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and... 0.05 Archaeplastida
AT1G05660 No alias Pectin lyase-like superfamily protein 0.01 Archaeplastida
AT1G10640 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT1G80170 No alias Pectin lyase-like superfamily protein 0.01 Archaeplastida
AT2G43880 No alias Pectin lyase-like superfamily protein 0.01 Archaeplastida
AT2G43890 No alias Pectin lyase-like superfamily protein 0.01 Archaeplastida
AT3G07970 QRT2 Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT3G26610 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT4G01890 No alias Pectin lyase-like superfamily protein 0.01 Archaeplastida
AT5G44830 No alias Pectin lyase-like superfamily protein 0.01 Archaeplastida
GSVIVT01013800001 No alias Cell wall.pectin.modification and... 0.01 Archaeplastida
GSVIVT01017644001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.01 Archaeplastida
GSVIVT01031298001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.01 Archaeplastida
GSVIVT01032114001 No alias Polygalacturonase OS=Actinidia deliciosa 0.02 Archaeplastida
GSVIVT01032117001 No alias Cell wall.pectin.modification and... 0.01 Archaeplastida
GSVIVT01032118001 No alias Cell wall.pectin.modification and... 0.01 Archaeplastida
GSVIVT01032447001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01033362001 No alias Cell wall.pectin.modification and... 0.02 Archaeplastida
GSVIVT01033364001 No alias Cell wall.pectin.modification and... 0.02 Archaeplastida
Gb_07779 No alias Polygalacturonase OS=Actinidia deliciosa... 0.02 Archaeplastida
Gb_12008 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os03g11760.1 No alias Polygalacturonase OS=Actinidia deliciosa... 0.03 Archaeplastida
LOC_Os03g59330.1 No alias polygalacturonase (QRT2) 0.04 Archaeplastida
LOC_Os05g46510.1 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os05g50260.1 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.17 Archaeplastida
MA_101764g0010 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Solyc01g087280.2.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc02g067630.3.1 No alias Polygalacturonase OS=Prunus persica... 0.03 Archaeplastida
Solyc02g067640.3.1 No alias Polygalacturonase OS=Prunus persica... 0.02 Archaeplastida
Solyc08g060970.4.1 No alias Probable polygalacturonase At3g15720 OS=Arabidopsis... 0.33 Archaeplastida
Solyc12g019180.2.1 No alias Polygalacturonase OS=Prunus persica... 0.01 Archaeplastida
Solyc12g019230.2.1 No alias Polygalacturonase OS=Prunus persica... 0.04 Archaeplastida
Zm00001e013553_P001 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e016759_P001 No alias Polygalacturonase QRT2 OS=Arabidopsis thaliana... 0.06 Archaeplastida
Zm00001e019002_P001 No alias Polygalacturonase OS=Prunus persica... 0.01 Archaeplastida
Zm00001e026600_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e027720_P001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e032294_P001 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 63 397
No external refs found!