LOC_Os05g48870.1

Description : transcription factor (ARF)

Gene families : OG0000080 (Archaeplastida) Phylogenetic Tree(s): OG0000080_tree ,
OG_05_0000395 (LandPlants) Phylogenetic Tree(s): OG_05_0000395_tree ,
OG_06_0002431 (SeedPlants) Phylogenetic Tree(s): OG_06_0002431_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os05g48870.1
Cluster	HCCA: Cluster_97

Target	Alias	Description	ECC score	Gene Family Method	Actions
AMTR_s00007p00267580	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
AMTR_s00148p00046020	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
AMTR_s00155p00082980	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
GSVIVT01020805001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
GSVIVT01021552001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
Gb_39685	No alias	transcription factor (ARF)	0.03	Archaeplastida
LOC_Os01g13520.1	No alias	transcription factor (ARF)	0.05	Archaeplastida
MA_103763g0010	No alias	Auxin response factor 6 OS=Arabidopsis thaliana...	0.03	Archaeplastida
MA_10432580g0010	No alias	transcription factor (ARF)	0.02	Archaeplastida
MA_137387g0010	No alias	no hits & (original description: none)	0.05	Archaeplastida
Mp2g02890.1	No alias	Auxin response factor 19 OS=Oryza sativa subsp. japonica...	0.01	Archaeplastida
Pp3c13_4720V3.1	No alias	auxin response factor 6	0.01	Archaeplastida
Pp3c1_40270V3.1	No alias	auxin response factor 6	0.05	Archaeplastida
Pp3c26_11550V3.1	No alias	auxin response factor 6	0.02	Archaeplastida
Solyc01g096070.3.1	No alias	transcription factor (ARF)	0.07	Archaeplastida
Solyc05g047460.3.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
Solyc05g056040.3.1	No alias	transcription factor (ARF)	0.04	Archaeplastida
/td>-->	Archaeplastida	Zm00001e003229_P002	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e006577_P003	No alias	transcription factor (ARF)	0.06	Archaeplastida
Zm00001e013639_P001	No alias	transcription factor (ARF)	0.05	Archaeplastida
Zm00001e016366_P002	No alias	transcription factor (ARF)	0.02	Archaeplastida
Zm00001e018126_P002	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e020205_P004	No alias	transcription factor (ARF)	0.05	Archaeplastida
Zm00001e025163_P001	No alias	transcription factor (ARF)	0.06	Archaeplastida
Zm00001e030325_P003	No alias	transcription factor (ARF)	0.06	Archaeplastida
Zm00001e032135_P002	No alias	transcription factor (ARF)	0.06	Archaeplastida
Zm00001e032423_P002	No alias	transcription factor (ARF)	0.06	Archaeplastida
Zm00001e041910_P003	No alias	transcription factor (ARF)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0008289	lipid binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR010525	Auxin_resp	268	348
IPR003340	B3_DNA-bd	142	243

External Links

No external refs found!

LOC_Os05g48870.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation