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  5. AMTR_s00006p00267030

AMTR_s00006p00267030 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00006.296

Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).RBM25 pre-mRNA splicing regulator


Gene families : OG0005856 (Archaeplastida) Phylogenetic Tree(s): OG0005856_tree ,
OG_05_0005723 (LandPlants) Phylogenetic Tree(s): OG_05_0005723_tree ,
OG_06_0008767 (SeedPlants) Phylogenetic Tree(s): OG_06_0008767_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00006p00267030
Cluster HCCA: Cluster_185

Target Alias Description ECC score Gene Family Method Actions
AT1G60200 No alias splicing factor PWI domain-containing protein / RNA... 0.02 Archaeplastida
Cpa|evm.model.tig00001065.13 No alias No description available 0.02 Archaeplastida
GSVIVT01020233001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
LOC_Os08g32100.1 No alias pre-mRNA splicing factor (RBM25) 0.02 Archaeplastida
MA_96952g0010 No alias pre-mRNA splicing factor (RBM25) 0.04 Archaeplastida
Mp4g16880.1 No alias pre-mRNA splicing factor (RBM25) 0.05 Archaeplastida
Smo440812 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
Zm00001e004229_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e022382_P002 No alias pre-mRNA splicing factor (RBM25) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
BP GO:0006397 mRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008374 O-acyltransferase activity IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 220 289
IPR002483 PWI_dom 853 919
No external refs found!