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Description : WTF1 plastidial RNA basal splicing factor
Gene families : OG0001104 (Archaeplastida) Phylogenetic Tree(s): OG0001104_tree ,
OG_05_0001147 (LandPlants) Phylogenetic Tree(s): OG_05_0001147_tree ,
OG_06_0002903 (SeedPlants) Phylogenetic Tree(s): OG_06_0002903_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: LOC_Os05g49610.1 | |
| Cluster | HCCA: Cluster_324 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00007p00268210 | evm_27.TU.AmTr_v1... | Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis thaliana | 0.03 | Archaeplastida | |
| AMTR_s00014p00229190 | evm_27.TU.AmTr_v1... | Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis thaliana | 0.02 | Archaeplastida | |
| AMTR_s00021p00241290 | evm_27.TU.AmTr_v1... | RNA processing.organelle machineries.RNA... | 0.05 | Archaeplastida | |
| AMTR_s00033p00133210 | evm_27.TU.AmTr_v1... | RNA processing.organelle machineries.RNA... | 0.03 | Archaeplastida | |
| AT4G01037 | WTF1, AtWTF1 | Ubiquitin carboxyl-terminal hydrolase family protein | 0.06 | Archaeplastida | |
| AT5G62990 | emb1692 | Ubiquitin carboxyl-terminal hydrolase family protein | 0.03 | Archaeplastida | |
| Gb_07993 | No alias | WTF1 plastidial RNA basal splicing factor | 0.06 | Archaeplastida | |
| MA_158434g0010 | No alias | WTF1 plastidial RNA basal splicing factor | 0.03 | Archaeplastida | |
| MA_423098g0010 | No alias | WTF1 plastidial RNA basal splicing factor | 0.06 | Archaeplastida | |
| Pp3c18_21300V3.1 | No alias | Ubiquitin carboxyl-terminal hydrolase family protein | 0.03 | Archaeplastida | |
| Smo409264 | No alias | Protein WHATS THIS FACTOR 1 OS=Zea mays | 0.02 | Archaeplastida | |
| Smo422954 | No alias | Protein WHATS THIS FACTOR 1 homolog OS=Oryza sativa... | 0.03 | Archaeplastida | |
| Zm00001e026570_P001 | No alias | WTF1 plastidial RNA basal splicing factor | 0.09 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0003743 | translation initiation factor activity | IEP | Neighborhood |
| MF | GO:0003746 | translation elongation factor activity | IEP | Neighborhood |
| MF | GO:0003747 | translation release factor activity | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| BP | GO:0006413 | translational initiation | IEP | Neighborhood |
| BP | GO:0006414 | translational elongation | IEP | Neighborhood |
| BP | GO:0006415 | translational termination | IEP | Neighborhood |
| BP | GO:0006605 | protein targeting | IEP | Neighborhood |
| BP | GO:0006612 | protein targeting to membrane | IEP | Neighborhood |
| BP | GO:0006613 | cotranslational protein targeting to membrane | IEP | Neighborhood |
| BP | GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | IEP | Neighborhood |
| MF | GO:0008079 | translation termination factor activity | IEP | Neighborhood |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | Neighborhood |
| MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
| MF | GO:0016782 | transferase activity, transferring sulfur-containing groups | IEP | Neighborhood |
| BP | GO:0022411 | cellular component disassembly | IEP | Neighborhood |
| BP | GO:0032984 | protein-containing complex disassembly | IEP | Neighborhood |
| BP | GO:0033365 | protein localization to organelle | IEP | Neighborhood |
| BP | GO:0034613 | cellular protein localization | IEP | Neighborhood |
| MF | GO:0035596 | methylthiotransferase activity | IEP | Neighborhood |
| BP | GO:0043624 | cellular protein complex disassembly | IEP | Neighborhood |
| BP | GO:0043933 | protein-containing complex subunit organization | IEP | Neighborhood |
| BP | GO:0045047 | protein targeting to ER | IEP | Neighborhood |
| MF | GO:0046914 | transition metal ion binding | IEP | Neighborhood |
| MF | GO:0050497 | transferase activity, transferring alkylthio groups | IEP | Neighborhood |
| MF | GO:0051539 | 4 iron, 4 sulfur cluster binding | IEP | Neighborhood |
| BP | GO:0070727 | cellular macromolecule localization | IEP | Neighborhood |
| BP | GO:0070972 | protein localization to endoplasmic reticulum | IEP | Neighborhood |
| BP | GO:0072594 | establishment of protein localization to organelle | IEP | Neighborhood |
| BP | GO:0072599 | establishment of protein localization to endoplasmic reticulum | IEP | Neighborhood |
| BP | GO:0072657 | protein localization to membrane | IEP | Neighborhood |
| BP | GO:0090150 | establishment of protein localization to membrane | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR021099 | PORR_domain | 66 | 393 |
| No external refs found! |