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  5. LOC_Os05g50340.1

LOC_Os05g50340.1


Description : transcription factor (MYB-related)


Gene families : OG0000067 (Archaeplastida) Phylogenetic Tree(s): OG0000067_tree ,
OG_05_0000767 (LandPlants) Phylogenetic Tree(s): OG_05_0000767_tree ,
OG_06_0000381 (SeedPlants) Phylogenetic Tree(s): OG_06_0000381_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g50340.1
Cluster HCCA: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
AT1G70000 No alias myb-like transcription factor family protein 0.04 Archaeplastida
AT1G74840 No alias Homeodomain-like superfamily protein 0.02 Archaeplastida
AT1G75250 RSM3, ATRL6, RL6 RAD-like 6 0.03 Archaeplastida
AT4G36570 ATRL3, RL3 RAD-like 3 0.02 Archaeplastida
AT5G04760 No alias Duplicated homeodomain-like superfamily protein 0.03 Archaeplastida
AT5G56840 No alias myb-like transcription factor family protein 0.04 Archaeplastida
AT5G58900 No alias Homeodomain-like transcriptional regulator 0.03 Archaeplastida
GSVIVT01016370001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01028262001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
GSVIVT01031975001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01031982001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01036090001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
LOC_Os01g09280.1 No alias transcription factor (MYB-related) 0.05 Archaeplastida
MA_16729g0010 No alias transcription factor (MYB-related) 0.04 Archaeplastida
MA_41041g0010 No alias transcription factor (MYB-related) 0.03 Archaeplastida
MA_488767g0010 No alias transcription factor (MYB-related) 0.03 Archaeplastida
Pp3c9_19080V3.1 No alias myb-like transcription factor family protein 0.03 Archaeplastida
Solyc03g096350.3.1 No alias transcription factor (MYB-related) 0.04 Archaeplastida
Solyc08g065380.3.1 No alias transcription factor (MYB-related) 0.04 Archaeplastida
Solyc11g071500.3.1 No alias transcription factor (MYB-related) 0.03 Archaeplastida
Zm00001e025784_P001 No alias transcription factor (MYB-related) 0.03 Archaeplastida
Zm00001e025946_P002 No alias transcription factor (MYB-related) 0.03 Archaeplastida
Zm00001e028003_P001 No alias transcription factor (MYB-related) 0.04 Archaeplastida
Zm00001e028729_P001 No alias transcription factor (MYB-related) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Neighborhood
BP GO:0003333 amino acid transmembrane transport IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006820 anion transport IEP Neighborhood
BP GO:0006865 amino acid transport IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0015711 organic anion transport IEP Neighborhood
BP GO:0015849 organic acid transport IEP Neighborhood
BP GO:0016052 carbohydrate catabolic process IEP Neighborhood
MF GO:0016160 amylase activity IEP Neighborhood
MF GO:0016161 beta-amylase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016872 intramolecular lyase activity IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
BP GO:0034220 ion transmembrane transport IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
BP GO:0046942 carboxylic acid transport IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0098656 anion transmembrane transport IEP Neighborhood
BP GO:1903825 organic acid transmembrane transport IEP Neighborhood
BP GO:1905039 carboxylic acid transmembrane transport IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!