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  5. AMTR_s00006p00267830

AMTR_s00006p00267830 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00006.305

Description : Nutrient uptake.iron uptake.regulation.IDF1 IRT1-ubiquitin ligase


Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0001331 (LandPlants) Phylogenetic Tree(s): OG_05_0001331_tree ,
OG_06_0000478 (SeedPlants) Phylogenetic Tree(s): OG_06_0000478_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00006p00267830
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00263220 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AMTR_s00152p00054630 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AT1G15100 RHA2A RING-H2 finger A2A 0.03 Archaeplastida
AT1G22500 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT2G17450 RHA3A RING-H2 finger A3A 0.04 Archaeplastida
AT2G42360 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT3G03550 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT4G11360 RHA1B RING-H2 finger A1B 0.03 Archaeplastida
AT4G11370 RHA1A RING-H2 finger A1A 0.02 Archaeplastida
AT4G35840 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT5G01880 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT5G05280 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT5G06490 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT5G07040 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT5G17600 No alias RING/U-box superfamily protein 0.03 Archaeplastida
GSVIVT01000538001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
GSVIVT01012015001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01012022001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01018343001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01020665001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01028038001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
GSVIVT01030125001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
Gb_04643 No alias RING-H2 finger protein ATL60 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_04644 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Gb_04645 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Gb_05385 No alias RHA2 signal transducer of abscisic acid perception 0.05 Archaeplastida
Gb_14312 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Gb_40644 No alias no hits & (original description: none) 0.06 Archaeplastida
LOC_Os02g15060.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os02g45780.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os02g46340.1 No alias E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os02g52210.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os08g38460.1 No alias ubiquitin protein ligase (XERICO) 0.04 Archaeplastida
LOC_Os08g43670.1 No alias NEP1-interacting protein 2 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os09g30160.1 No alias ubiquitin protein ligase (XERICO) 0.05 Archaeplastida
LOC_Os11g39640.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os12g24490.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_10208579g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_10244600g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10427748g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_1252g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_129306g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_201391g0010 No alias Probable E3 ubiquitin-protein ligase RHA1A... 0.03 Archaeplastida
MA_289646g0010 No alias E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis... 0.03 Archaeplastida
MA_373963g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_43543g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_479316g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_51630g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_61349g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_772565g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_786911g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Mp1g27170.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Mp3g00390.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Smo109459 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
Smo448587 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Solyc01g081040.4.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc03g114090.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc04g014220.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc05g010175.1.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc06g007230.2.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Solyc10g081790.1.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Solyc12g094385.1.1 No alias E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e000398_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e007129_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e018028_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e019779_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e022781_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e026906_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e029032_P001 No alias RING-H2-class E3 ligase 0.07 Archaeplastida
Zm00001e030930_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e031874_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e035560_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e041385_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0010181 FMN binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 87 132
No external refs found!