AT1G30460 (CPSF30, ATCPSF30)


Aliases : CPSF30, ATCPSF30

Description : cleavage and polyadenylation specificity factor 30


Gene families : OG0002163 (Archaeplastida) Phylogenetic Tree(s): OG0002163_tree ,
OG_05_0005447 (LandPlants) Phylogenetic Tree(s): OG_05_0005447_tree ,
OG_06_0005316 (SeedPlants) Phylogenetic Tree(s): OG_06_0005316_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G30460
Cluster HCCA: Cluster_260

Target Alias Description ECC score Gene Family Method Actions
MA_10432729g0010 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle RCA Interproscan
MF GO:0003676 nucleic acid binding ISS Interproscan
MF GO:0003723 RNA binding IDA Interproscan
MF GO:0004519 endonuclease activity IDA Interproscan
MF GO:0004521 endoribonuclease activity IDA Interproscan
MF GO:0005515 protein binding IPI Interproscan
MF GO:0005516 calmodulin binding IDA Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005847 mRNA cleavage and polyadenylation specificity factor complex ISS Interproscan
BP GO:0006378 mRNA polyadenylation IMP Interproscan
BP GO:0006396 RNA processing IDA Interproscan
BP GO:0006396 RNA processing RCA Interproscan
BP GO:0006396 RNA processing TAS Interproscan
BP GO:0006397 mRNA processing RCA Interproscan
BP GO:0006979 response to oxidative stress IMP Interproscan
BP GO:1900363 regulation of mRNA polyadenylation IMP Interproscan
Type GO Term Name Evidence Source
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0004484 mRNA guanylyltransferase activity IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
CC GO:0005654 nucleoplasm IEP Neighborhood
BP GO:0006282 regulation of DNA repair IEP Neighborhood
BP GO:0006370 7-methylguanosine mRNA capping IEP Neighborhood
BP GO:0006997 nucleus organization IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
MF GO:0008192 RNA guanylyltransferase activity IEP Neighborhood
BP GO:0008284 positive regulation of cell proliferation IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
BP GO:0009410 response to xenobiotic stimulus IEP Neighborhood
BP GO:0009452 7-methylguanosine RNA capping IEP Neighborhood
BP GO:0009791 post-embryonic development IEP Neighborhood
CC GO:0010008 endosome membrane IEP Neighborhood
BP GO:0010050 vegetative phase change IEP Neighborhood
BP GO:0016572 histone phosphorylation IEP Neighborhood
CC GO:0016604 nuclear body IEP Neighborhood
CC GO:0016607 nuclear speck IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
BP GO:0030422 production of siRNA involved in RNA interference IEP Neighborhood
CC GO:0030904 retromer complex IEP Neighborhood
BP GO:0031050 dsRNA fragmentation IEP Neighborhood
CC GO:0031902 late endosome membrane IEP Neighborhood
CC GO:0032585 multivesicular body membrane IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA IEP Neighborhood
BP GO:0036260 RNA capping IEP Neighborhood
MF GO:0043621 protein self-association IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044440 endosomal part IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
MF GO:0070568 guanylyltransferase activity IEP Neighborhood
BP GO:0070918 production of small RNA involved in gene silencing by RNA IEP Neighborhood
BP GO:0090351 seedling development IEP Neighborhood
BP GO:2001020 regulation of response to DNA damage stimulus IEP Neighborhood
InterPro domains Description Start Stop
IPR007275 YTH_domain 237 371
No external refs found!