1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os06g01200.1

LOC_Os06g01200.1


Description : E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum (sp|p0ch30|ring1_goshi : 172.0)


Gene families : OG0000041 (Archaeplastida) Phylogenetic Tree(s): OG0000041_tree ,
OG_05_0000046 (LandPlants) Phylogenetic Tree(s): OG_05_0000046_tree ,
OG_06_0003158 (SeedPlants) Phylogenetic Tree(s): OG_06_0003158_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g01200.1
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00250160 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00129p00125450 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AT1G26800 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT3G13430 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT3G60080 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT5G59550 No alias zinc finger (C3HC4-type RING finger) family protein 0.05 Archaeplastida
Gb_22125 No alias E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os05g01940.1 No alias elicitor peptide precursor (proPEP) 0.04 Archaeplastida
LOC_Os11g37230.1 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_3413240g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_79051g0010 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.02 Archaeplastida
MA_8499g0020 No alias E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Pp3c1_42450V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Solyc05g007895.1.1 No alias E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis... 0.02 Archaeplastida
Solyc05g018050.1.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc06g005650.2.1 No alias E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis... 0.03 Archaeplastida
Solyc09g074460.3.1 No alias E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc12g008440.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e001202_P001 No alias E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e003411_P001 No alias E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e004520_P001 No alias E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e010857_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e011788_P002 No alias E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.04 Archaeplastida
Zm00001e016135_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e036731_P001 No alias E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... 0.05 Archaeplastida
Zm00001e037527_P001 No alias E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e038273_P001 No alias E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.02 Archaeplastida
Zm00001e039308_P001 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000813 ESCRT I complex IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
BP GO:0016197 endosomal transport IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP Neighborhood
CC GO:0036452 ESCRT complex IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044440 endosomal part IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0071985 multivesicular body sorting pathway IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 201 243
No external refs found!