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  5. LOC_Os06g02560.1

LOC_Os06g02560.1


Description : component GRF of GRF-GIF transcriptional complex


Gene families : OG0000341 (Archaeplastida) Phylogenetic Tree(s): OG0000341_tree ,
OG_05_0000223 (LandPlants) Phylogenetic Tree(s): OG_05_0000223_tree ,
OG_06_0000402 (SeedPlants) Phylogenetic Tree(s): OG_06_0000402_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g02560.1
Cluster HCCA: Cluster_278

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00189460 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.GRF-GIF... 0.03 Archaeplastida
AMTR_s00048p00216350 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.GRF-GIF... 0.04 Archaeplastida
AT3G13960 GRF5, AtGRF5 growth-regulating factor 5 0.03 Archaeplastida
AT4G37740 GRF2, AtGRF2 growth-regulating factor 2 0.03 Archaeplastida
GSVIVT01009299001 No alias RNA biosynthesis.transcriptional activation.GRF-GIF... 0.02 Archaeplastida
GSVIVT01015095001 No alias RNA biosynthesis.transcriptional activation.GRF-GIF... 0.04 Archaeplastida
GSVIVT01033800001 No alias RNA biosynthesis.transcriptional activation.GRF-GIF... 0.03 Archaeplastida
MA_111469g0010 No alias component GRF of GRF-GIF transcriptional complex 0.02 Archaeplastida
MA_137877g0010 No alias component GRF of GRF-GIF transcriptional complex 0.02 Archaeplastida
MA_18836g0010 No alias component GRF of GRF-GIF transcriptional complex 0.02 Archaeplastida
MA_33661g0010 No alias component GRF of GRF-GIF transcriptional complex 0.02 Archaeplastida
Pp3c12_3720V3.1 No alias growth-regulating factor 2 0.05 Archaeplastida
Solyc01g091540.3.1 No alias component GRF of GRF-GIF transcriptional complex 0.04 Archaeplastida
Solyc02g092070.3.1 No alias component GRF of GRF-GIF transcriptional complex 0.07 Archaeplastida
Solyc03g082430.1.1 No alias component GRF of GRF-GIF transcriptional complex 0.03 Archaeplastida
Solyc04g077510.4.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc07g041640.3.1 No alias component GRF of GRF-GIF transcriptional complex 0.04 Archaeplastida
Solyc08g005430.3.1 No alias component GRF of GRF-GIF transcriptional complex 0.04 Archaeplastida
Solyc10g083510.2.1 No alias component GRF of GRF-GIF transcriptional complex 0.05 Archaeplastida
Solyc12g096070.2.1 No alias component GRF of GRF-GIF transcriptional complex 0.02 Archaeplastida
Zm00001e005558_P001 No alias component GRF of GRF-GIF transcriptional complex 0.02 Archaeplastida
Zm00001e012291_P001 No alias Growth-regulating factor 9 OS=Oryza sativa subsp.... 0.02 Archaeplastida
Zm00001e015436_P001 No alias component GRF of GRF-GIF transcriptional complex 0.03 Archaeplastida
Zm00001e015561_P002 No alias component GRF of GRF-GIF transcriptional complex 0.03 Archaeplastida
Zm00001e023769_P003 No alias component GRF of GRF-GIF transcriptional complex 0.02 Archaeplastida
Zm00001e030774_P001 No alias component GRF of GRF-GIF transcriptional complex 0.02 Archaeplastida
Zm00001e036224_P001 No alias component GRF of GRF-GIF transcriptional complex 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR014978 Gln-Leu-Gln_QLQ 25 58
IPR014977 WRC_dom 98 140
No external refs found!