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  5. LOC_Os06g03690.2

LOC_Os06g03690.2


Description : NSR RNA splicing regulator


Gene families : OG0001050 (Archaeplastida) Phylogenetic Tree(s): OG0001050_tree ,
OG_05_0000850 (LandPlants) Phylogenetic Tree(s): OG_05_0000850_tree ,
OG_06_0000973 (SeedPlants) Phylogenetic Tree(s): OG_06_0000973_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g03690.2
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00116460 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome-associated... 0.03 Archaeplastida
GSVIVT01038597001 No alias RNA processing.RNA splicing.spliceosome-associated... 0.04 Archaeplastida
Gb_18526 No alias NSR RNA splicing regulator 0.03 Archaeplastida
Solyc06g052080.4.1 No alias NSR RNA splicing regulator 0.03 Archaeplastida
Solyc06g052145.1.1 No alias NSR RNA splicing regulator 0.02 Archaeplastida
Zm00001e036636_P004 No alias NSR RNA splicing regulator 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0004411 homogentisate 1,2-dioxygenase activity IEP Neighborhood
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
BP GO:0006558 L-phenylalanine metabolic process IEP Neighborhood
BP GO:0006559 L-phenylalanine catabolic process IEP Neighborhood
BP GO:0006570 tyrosine metabolic process IEP Neighborhood
BP GO:0006801 superoxide metabolic process IEP Neighborhood
MF GO:0008483 transaminase activity IEP Neighborhood
BP GO:0009063 cellular amino acid catabolic process IEP Neighborhood
BP GO:0009072 aromatic amino acid family metabolic process IEP Neighborhood
BP GO:0009074 aromatic amino acid family catabolic process IEP Neighborhood
BP GO:0016054 organic acid catabolic process IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Neighborhood
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Neighborhood
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Neighborhood
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
BP GO:0019439 aromatic compound catabolic process IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
MF GO:0033897 ribonuclease T2 activity IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0042737 drug catabolic process IEP Neighborhood
BP GO:0044282 small molecule catabolic process IEP Neighborhood
BP GO:0046395 carboxylic acid catabolic process IEP Neighborhood
MF GO:0051213 dioxygenase activity IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:1901361 organic cyclic compound catabolic process IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
BP GO:1901605 alpha-amino acid metabolic process IEP Neighborhood
BP GO:1901606 alpha-amino acid catabolic process IEP Neighborhood
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Neighborhood
BP GO:1902222 erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 165 235
No external refs found!