LOC_Os06g03790.1


Description : component mtRPL29 of large ribosomal subunit proteome


Gene families : OG0006595 (Archaeplastida) Phylogenetic Tree(s): OG0006595_tree ,
OG_05_0007619 (LandPlants) Phylogenetic Tree(s): OG_05_0007619_tree ,
OG_06_0008412 (SeedPlants) Phylogenetic Tree(s): OG_06_0008412_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g03790.1
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
AT1G07830 No alias ribosomal protein L29 family protein 0.03 Archaeplastida
MA_10431503g0010 No alias component mtRPL29 of large ribosomal subunit proteome 0.05 Archaeplastida
Mp7g13440.1 No alias component mtRPL29 of large ribosomal subunit proteome 0.05 Archaeplastida
Pp3c17_20320V3.1 No alias ribosomal protein L29 family protein 0.05 Archaeplastida
Solyc03g114050.3.1 No alias component mtRPL29 of large ribosomal subunit proteome 0.02 Archaeplastida
Zm00001e036632_P002 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005761 mitochondrial ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000178 exosome (RNase complex) IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
CC GO:0005789 endoplasmic reticulum membrane IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0007029 endoplasmic reticulum organization IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
CC GO:0016272 prefoldin complex IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0032299 ribonuclease H2 complex IEP Neighborhood
CC GO:0035145 exon-exon junction complex IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
CC GO:1905354 exoribonuclease complex IEP Neighborhood
InterPro domains Description Start Stop
IPR010729 Ribosomal_L47_mit 38 125
No external refs found!