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  5. LOC_Os06g04200.3

LOC_Os06g04200.3


Description : granule-bound starch (amylose) synthase


Gene families : OG0000161 (Archaeplastida) Phylogenetic Tree(s): OG0000161_tree ,
OG_05_0004954 (LandPlants) Phylogenetic Tree(s): OG_05_0004954_tree ,
OG_06_0005536 (SeedPlants) Phylogenetic Tree(s): OG_06_0005536_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g04200.3
Cluster HCCA: Cluster_361

Target Alias Description ECC score Gene Family Method Actions
AT5G24300 SSI1, ATSS1, SSI Glycogen/starch synthases, ADP-glucose type 0.02 Archaeplastida
Cre16.g663850 No alias Probable starch synthase 4, chloroplastic/amyloplastic... 0.02 Archaeplastida
GSVIVT01019680001 No alias Carbohydrate metabolism.starch... 0.03 Archaeplastida
LOC_Os06g06560.1 No alias starch synthase (SSI) 0.02 Archaeplastida
MA_10429460g0010 No alias granule-bound starch (amylose) synthase 0.04 Archaeplastida
Mp1g23640.1 No alias granule-bound starch (amylose) synthase 0.02 Archaeplastida
Mp3g25350.1 No alias starch synthase (SSI) 0.02 Archaeplastida
Pp3c12_3280V3.1 No alias Glycogen/starch synthases, ADP-glucose type 0.02 Archaeplastida
Pp3c21_3210V3.1 No alias UDP-Glycosyltransferase superfamily protein 0.04 Archaeplastida
Pp3c9_14980V3.1 No alias starch synthase 4 0.02 Archaeplastida
Zm00001e030868_P001 No alias starch synthase (SSII) 0.03 Archaeplastida
Zm00001e036589_P003 No alias granule-bound starch (amylose) synthase 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0004356 glutamate-ammonia ligase activity IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
MF GO:0005544 calcium-dependent phospholipid binding IEP Neighborhood
BP GO:0006541 glutamine metabolic process IEP Neighborhood
BP GO:0006542 glutamine biosynthetic process IEP Neighborhood
BP GO:0009064 glutamine family amino acid metabolic process IEP Neighborhood
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016211 ammonia ligase activity IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Neighborhood
MF GO:0045735 nutrient reservoir activity IEP Neighborhood
InterPro domains Description Start Stop
IPR013534 Starch_synth_cat_dom 84 344
IPR001296 Glyco_trans_1 397 522
No external refs found!