LOC_Os06g04850.1

Description : transcription factor (HD-ZIP I/II)

Gene families : OG0000355 (Archaeplastida) Phylogenetic Tree(s): OG0000355_tree ,
OG_05_0000278 (LandPlants) Phylogenetic Tree(s): OG_05_0000278_tree ,
OG_06_0000297 (SeedPlants) Phylogenetic Tree(s): OG_06_0000297_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os06g04850.1
Cluster	HCCA: Cluster_195

Target	Alias	Description	ECC score	Gene Family Method
AT2G22800	HAT9	Homeobox-leucine zipper protein family	0.03	Archaeplastida
AT2G44910	HB4, ATHB-4, ATHB4	homeobox-leucine zipper protein 4	0.03	Archaeplastida
Cpa\|evm.model.tig00000203.28	No alias	No description available	0.01	Archaeplastida
GSVIVT01001366001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.03	Archaeplastida
GSVIVT01009274001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.04	Archaeplastida
Gb_12394	No alias	Homeobox-leucine zipper protein HOX11 OS=Oryza sativa...	0.02	Archaeplastida
MA_12174g0010	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
MA_194299g0010	No alias	transcription factor (HD-ZIP I/II)	0.03	Archaeplastida
Pp3c11_21670V3.1	No alias	homeobox from Arabidopsis thaliana	0.01	Archaeplastida
Pp3c15_21200V3.1	No alias	homeobox from Arabidopsis thaliana	0.03	Archaeplastida
Solyc02g091930.3.1	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
Zm00001e003763_P001	No alias	transcription factor (HD-ZIP I/II)	0.05	Archaeplastida
Zm00001e007343_P003	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida
Zm00001e025216_P001	No alias	transcription factor (HD-ZIP I/II)	0.05	Archaeplastida
Zm00001e029967_P001	No alias	no hits & (original description: none)	0.11	Archaeplastida
Zm00001e036547_P001	No alias	transcription factor (HD-ZIP I/II)	0.04	Archaeplastida
Zm00001e038644_P001	No alias	transcription factor (HD-ZIP I/II)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003905	alkylbase DNA N-glycosylase activity	IEP	Neighborhood
MF	GO:0004601	peroxidase activity	IEP	Neighborhood
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005088	Ras guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005089	Rho guanyl-nucleotide exchange factor activity	IEP	Neighborhood
CC	GO:0005618	cell wall	IEP	Neighborhood
BP	GO:0006284	base-excision repair	IEP	Neighborhood
BP	GO:0006950	response to stress	IEP	Neighborhood
BP	GO:0006979	response to oxidative stress	IEP	Neighborhood
MF	GO:0008725	DNA-3-methyladenine glycosylase activity	IEP	Neighborhood
MF	GO:0009055	electron transfer activity	IEP	Neighborhood
MF	GO:0016209	antioxidant activity	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Neighborhood
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	Neighborhood
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Neighborhood
MF	GO:0017016	Ras GTPase binding	IEP	Neighborhood
MF	GO:0017048	Rho GTPase binding	IEP	Neighborhood
MF	GO:0019104	DNA N-glycosylase activity	IEP	Neighborhood
CC	GO:0030312	external encapsulating structure	IEP	Neighborhood
CC	GO:0031225	anchored component of membrane	IEP	Neighborhood
CC	GO:0031226	intrinsic component of plasma membrane	IEP	Neighborhood
MF	GO:0031267	small GTPase binding	IEP	Neighborhood
MF	GO:0043733	DNA-3-methylbase glycosylase activity	IEP	Neighborhood
CC	GO:0044459	plasma membrane part	IEP	Neighborhood
CC	GO:0046658	anchored component of plasma membrane	IEP	Neighborhood
CC	GO:0048046	apoplast	IEP	Neighborhood
BP	GO:0050896	response to stimulus	IEP	Neighborhood
MF	GO:0051020	GTPase binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001356	Homeobox_dom	93	147
IPR003106	Leu_zip_homeo	149	183

External Links

No external refs found!

LOC_Os06g04850.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation