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  5. LOC_Os06g05920.1

LOC_Os06g05920.1


Description : Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana (sp|q9fix3|pp407_arath : 582.0)


Gene families : OG0008008 (Archaeplastida) Phylogenetic Tree(s): OG0008008_tree ,
OG_05_0004984 (LandPlants) Phylogenetic Tree(s): OG_05_0004984_tree ,
OG_06_0001824 (SeedPlants) Phylogenetic Tree(s): OG_06_0001824_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g05920.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00140p00073890 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g39710... 0.04 Archaeplastida
AT5G39710 EMB2745 Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
MA_299481g0010 No alias Pentatricopeptide repeat-containing protein At5g39710... 0.4 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 427 459
IPR002885 Pentatricopeptide_repeat 322 355
IPR002885 Pentatricopeptide_repeat 147 179
IPR002885 Pentatricopeptide_repeat 558 600
IPR002885 Pentatricopeptide_repeat 361 410
IPR002885 Pentatricopeptide_repeat 470 515
IPR002885 Pentatricopeptide_repeat 185 235
IPR002885 Pentatricopeptide_repeat 256 305
No external refs found!