LOC_Os06g06540.1

Description : transcription factor (ERF)

Gene families : OG0000003 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000001 (LandPlants) Phylogenetic Tree(s): OG_05_0000001_tree ,
OG_06_0000007 (SeedPlants) Phylogenetic Tree(s): OG_06_0000007_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os06g06540.1
Cluster	HCCA: Cluster_41

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00264660	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	Archaeplastida
AT1G71450	No alias	Integrase-type DNA-binding superfamily protein	0.03	Archaeplastida
AT3G15210	ATERF4, RAP2.5,...	ethylene responsive element binding factor 4	0.03	Archaeplastida
AT5G07580	No alias	Integrase-type DNA-binding superfamily protein	0.02	Archaeplastida
AT5G13330	Rap2.6L	related to AP2 6l	0.02	Archaeplastida
AT5G67190	DEAR2	DREB and EAR motif protein 2	0.02	Archaeplastida
GSVIVT01013913001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
GSVIVT01013917001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
GSVIVT01013918001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
GSVIVT01013923001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
GSVIVT01013935001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
Gb_01211	No alias	transcription factor (DREB)	0.02	Archaeplastida
Gb_12965	No alias	Ethylene-responsive transcription factor ABR1...	0.02	Archaeplastida
Gb_15343	No alias	no hits & (original description: none)	0.02	Archaeplastida
Gb_24048	No alias	transcription factor (ERF)	0.02	Archaeplastida
Gb_24326	No alias	transcription factor (DREB)	0.02	Archaeplastida
Gb_24329	No alias	transcription factor (DREB)	0.02	Archaeplastida
Gb_26662	No alias	transcription factor (ERF)	0.02	Archaeplastida
Gb_26863	No alias	transcription factor (DREB)	0.02	Archaeplastida
LOC_Os02g42585.1	No alias	transcription factor (DREB)	0.04	Archaeplastida
LOC_Os02g43790.1	No alias	transcription factor (ERF)	0.04	Archaeplastida
LOC_Os03g09170.1	No alias	transcription factor (DREB)	0.04	Archaeplastida
LOC_Os07g47330.1	No alias	transcription factor (ERF)	0.04	Archaeplastida
LOC_Os11g06770.2	No alias	transcription factor (ERF)	0.03	Archaeplastida
MA_10082062g0010	No alias	transcription factor (DREB)	0.02	Archaeplastida
MA_10370681g0010	No alias	transcription factor (DREB)	0.02	Archaeplastida
MA_1037g0020	No alias	transcription factor (DREB)	0.02	Archaeplastida
MA_10431706g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_10436654g0010	No alias	Ethylene-responsive transcription factor ERF018...	0.02	Archaeplastida
MA_12171g0010	No alias	transcription factor (DREB)	0.02	Archaeplastida
MA_184464g0010	No alias	transcription factor (ERF)	0.02	Archaeplastida
MA_18454g0020	No alias	transcription factor (ERF)	0.02	Archaeplastida
MA_19854g0020	No alias	transcription factor (DREB)	0.04	Archaeplastida
MA_4032g0010	No alias	transcription factor (ERF)	0.03	Archaeplastida
MA_6305g0010	No alias	transcription factor (DREB)	0.02	Archaeplastida
MA_7168929g0010	No alias	Ethylene-responsive transcription factor ERF016...	0.02	Archaeplastida
MA_81029g0010	No alias	transcription factor (ERF)	0.03	Archaeplastida
MA_8384767g0010	No alias	transcription factor (DREB)	0.02	Archaeplastida
MA_959784g0010	No alias	transcription factor (DREB)	0.02	Archaeplastida
MA_9785986g0010	No alias	transcription factor (DREB)	0.02	Archaeplastida
Mp4g17430.1	No alias	Ethylene-responsive transcription factor ERF112...	0.03	Archaeplastida
Mp5g22160.1	No alias	Ethylene-responsive transcription factor ERF112...	0.02	Archaeplastida
Mp6g08690.1	No alias	transcription factor (DREB)	0.03	Archaeplastida
Mp7g17020.1	No alias	Dehydration-responsive element-binding protein 2C...	0.02	Archaeplastida
Pp3c12_25330V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.02	Archaeplastida
Pp3c21_13130V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.02	Archaeplastida
Pp3c27_1350V3.1	No alias	ERF domain protein 12	0.02	Archaeplastida
Pp3c4_23930V3.1	No alias	ethylene responsive element binding factor 1	0.02	Archaeplastida
Pp3c4_2660V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.03	Archaeplastida
Solyc02g093130.3.1	No alias	transcription factor (DREB)	0.02	Archaeplastida
Solyc03g093550.1.1	No alias	transcription factor (ERF)	0.04	Archaeplastida
Solyc03g093560.1.1	No alias	transcription factor (ERF)	0.02	Archaeplastida
Solyc03g114440.1.1	No alias	transcription factor (ERF). transcription factor (ERN1)	0.02	Archaeplastida
Solyc04g072900.1.1	No alias	transcription factor (DREB)	0.02	Archaeplastida
Solyc06g082590.1.1	No alias	transcription factor (ERF)	0.03	Archaeplastida
Solyc07g053740.1.1	No alias	transcription factor (ERF)	0.02	Archaeplastida
Solyc08g078170.1.1	No alias	transcription factor (ERF)	0.02	Archaeplastida
Solyc10g006130.1.1	No alias	transcription factor (ERF)	0.02	Archaeplastida
Solyc10g009110.1.1	No alias	transcription factor (ERF)	0.02	Archaeplastida
Zm00001e004208_P001	No alias	transcription factor (DREB)	0.03	Archaeplastida
Zm00001e006982_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e013927_P001	No alias	transcription factor (ERF)	0.03	Archaeplastida
Zm00001e015314_P001	No alias	transcription factor (ERF)	0.02	Archaeplastida
Zm00001e019837_P001	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e023157_P001	No alias	transcription factor (DREB)	0.02	Archaeplastida
Zm00001e023759_P001	No alias	Ethylene-responsive transcription factor ERF017...	0.02	Archaeplastida
Zm00001e023804_P001	No alias	Ethylene-responsive transcription factor ERF013...	0.02	Archaeplastida
Zm00001e025064_P001	No alias	transcription factor (ERF)	0.03	Archaeplastida
Zm00001e030585_P001	No alias	transcription factor (ERF). SHN-type cutin and suberin...	0.02	Archaeplastida
Zm00001e035837_P001	No alias	transcription factor (ERF)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004527	exonuclease activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	Neighborhood
BP	GO:0007275	multicellular organism development	IEP	Neighborhood
MF	GO:0008408	3'-5' exonuclease activity	IEP	Neighborhood
BP	GO:0009056	catabolic process	IEP	Neighborhood
BP	GO:0009057	macromolecule catabolic process	IEP	Neighborhood
BP	GO:0019941	modification-dependent protein catabolic process	IEP	Neighborhood
BP	GO:0032501	multicellular organismal process	IEP	Neighborhood
BP	GO:0032502	developmental process	IEP	Neighborhood
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	Neighborhood
BP	GO:0044248	cellular catabolic process	IEP	Neighborhood
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Neighborhood
BP	GO:0048856	anatomical structure development	IEP	Neighborhood
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEP	Neighborhood
BP	GO:1901575	organic substance catabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	120	169

External Links

No external refs found!

LOC_Os06g06540.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation