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  5. LOC_Os06g07350.1

LOC_Os06g07350.1


Description : C3H zinc finger transcription factor. component MAC5 of non-snRNP MOS4-associated complex


Gene families : OG0003787 (Archaeplastida) Phylogenetic Tree(s): OG0003787_tree ,
OG_05_0004047 (LandPlants) Phylogenetic Tree(s): OG_05_0004047_tree ,
OG_06_0005206 (SeedPlants) Phylogenetic Tree(s): OG_06_0005206_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g07350.1
Cluster HCCA: Cluster_354

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00207010 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome-associated... 0.04 Archaeplastida
Cre02.g075650 No alias RNA processing.RNA splicing.spliceosome-associated... 0.02 Archaeplastida
Gb_38162 No alias C3H zinc finger transcription factor. component MAC5 of... 0.04 Archaeplastida
Solyc04g017710.3.1 No alias C3H zinc finger transcription factor. component MAC5 of... 0.05 Archaeplastida
Solyc10g079190.3.1 No alias C3H zinc finger transcription factor. component MAC5 of... 0.05 Archaeplastida
Zm00001e036386_P001 No alias C3H zinc finger transcription factor. component MAC5 of... 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0004455 ketol-acid reductoisomerase activity IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0008652 cellular amino acid biosynthetic process IEP Neighborhood
BP GO:0009081 branched-chain amino acid metabolic process IEP Neighborhood
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Neighborhood
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
InterPro domains Description Start Stop
IPR032297 Torus 142 194
IPR000504 RRM_dom 230 286
No external refs found!