Aliases : evm_27.TU.AmTr_v1.0_scaffold00007.52
Description : RNA processing.RNA 3-end polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.Symplekin/Pta1 component
Gene families : OG0001799 (Archaeplastida) Phylogenetic Tree(s): OG0001799_tree ,
OG_05_0002801 (LandPlants) Phylogenetic Tree(s): OG_05_0002801_tree ,
OG_06_0002268 (SeedPlants) Phylogenetic Tree(s): OG_06_0002268_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AMTR_s00007p00088050 | |
Cluster | HCCA: Cluster_172 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT1G27595 | No alias | CONTAINS InterPro DOMAIN/s: Symplekin tight junction... | 0.1 | Archaeplastida | |
AT5G01400 | ESP4 | HEAT repeat-containing protein | 0.13 | Archaeplastida | |
GSVIVT01009244001 | No alias | RNA processing.RNA 3-end polyadenylation.Cleavage and... | 0.03 | Archaeplastida | |
GSVIVT01011157001 | No alias | RNA processing.RNA 3-end polyadenylation.Cleavage and... | 0.1 | Archaeplastida | |
Gb_23976 | No alias | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.04 | Archaeplastida | |
Gb_24672 | No alias | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.07 | Archaeplastida | |
LOC_Os01g49940.1 | No alias | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.08 | Archaeplastida | |
LOC_Os07g49320.1 | No alias | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.07 | Archaeplastida | |
MA_103237g0020 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida | |
MA_10426054g0020 | No alias | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.05 | Archaeplastida | |
MA_10430259g0010 | No alias | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.03 | Archaeplastida | |
MA_10432378g0010 | No alias | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.08 | Archaeplastida | |
MA_433916g0010 | No alias | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.02 | Archaeplastida | |
Mp6g03410.1 | No alias | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.04 | Archaeplastida | |
Pp3c2_10640V3.1 | No alias | HEAT repeat-containing protein | 0.05 | Archaeplastida | |
Smo442688 | No alias | RNA processing.RNA 3-end polyadenylation.Cleavage and... | 0.06 | Archaeplastida | |
Solyc04g076900.2.1 | No alias | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.07 | Archaeplastida | |
Solyc04g076910.3.1 | No alias | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.1 | Archaeplastida | |
Solyc09g005330.3.1 | No alias | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.1 | Archaeplastida | |
Solyc09g005340.3.1 | No alias | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.05 | Archaeplastida | |
Zm00001e020082_P004 | No alias | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.09 | Archaeplastida | |
Zm00001e035946_P001 | No alias | component Symplekin/Pta1 of Cleavage and Polyadenylation... | 0.08 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0000148 | 1,3-beta-D-glucan synthase complex | IEP | Neighborhood |
MF | GO:0000155 | phosphorelay sensor kinase activity | IEP | Neighborhood |
MF | GO:0000156 | phosphorelay response regulator activity | IEP | Neighborhood |
BP | GO:0000160 | phosphorelay signal transduction system | IEP | Neighborhood |
MF | GO:0000166 | nucleotide binding | IEP | Neighborhood |
BP | GO:0000226 | microtubule cytoskeleton organization | IEP | Neighborhood |
BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Neighborhood |
BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Neighborhood |
BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Neighborhood |
CC | GO:0000922 | spindle pole | IEP | Neighborhood |
MF | GO:0003674 | molecular_function | IEP | Neighborhood |
MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
MF | GO:0003677 | DNA binding | IEP | Neighborhood |
MF | GO:0003678 | DNA helicase activity | IEP | Neighborhood |
MF | GO:0003824 | catalytic activity | IEP | Neighborhood |
MF | GO:0003843 | 1,3-beta-D-glucan synthase activity | IEP | Neighborhood |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Neighborhood |
MF | GO:0003950 | NAD+ ADP-ribosyltransferase activity | IEP | Neighborhood |
MF | GO:0004003 | ATP-dependent DNA helicase activity | IEP | Neighborhood |
MF | GO:0004197 | cysteine-type endopeptidase activity | IEP | Neighborhood |
MF | GO:0004198 | calcium-dependent cysteine-type endopeptidase activity | IEP | Neighborhood |
MF | GO:0004386 | helicase activity | IEP | Neighborhood |
MF | GO:0004673 | protein histidine kinase activity | IEP | Neighborhood |
MF | GO:0004721 | phosphoprotein phosphatase activity | IEP | Neighborhood |
MF | GO:0005488 | binding | IEP | Neighborhood |
MF | GO:0005515 | protein binding | IEP | Neighborhood |
MF | GO:0005524 | ATP binding | IEP | Neighborhood |
CC | GO:0005575 | cellular_component | IEP | Neighborhood |
CC | GO:0005634 | nucleus | IEP | Neighborhood |
CC | GO:0005681 | spliceosomal complex | IEP | Neighborhood |
CC | GO:0005815 | microtubule organizing center | IEP | Neighborhood |
BP | GO:0006074 | (1->3)-beta-D-glucan metabolic process | IEP | Neighborhood |
BP | GO:0006075 | (1->3)-beta-D-glucan biosynthetic process | IEP | Neighborhood |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0006351 | transcription, DNA-templated | IEP | Neighborhood |
BP | GO:0006470 | protein dephosphorylation | IEP | Neighborhood |
BP | GO:0006471 | protein ADP-ribosylation | IEP | Neighborhood |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
BP | GO:0006811 | ion transport | IEP | Neighborhood |
BP | GO:0006812 | cation transport | IEP | Neighborhood |
BP | GO:0006813 | potassium ion transport | IEP | Neighborhood |
MF | GO:0008026 | ATP-dependent helicase activity | IEP | Neighborhood |
MF | GO:0008138 | protein tyrosine/serine/threonine phosphatase activity | IEP | Neighborhood |
MF | GO:0008144 | drug binding | IEP | Neighborhood |
MF | GO:0008194 | UDP-glycosyltransferase activity | IEP | Neighborhood |
MF | GO:0008324 | cation transmembrane transporter activity | IEP | Neighborhood |
BP | GO:0008380 | RNA splicing | IEP | Neighborhood |
MF | GO:0008915 | lipid-A-disaccharide synthase activity | IEP | Neighborhood |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | Neighborhood |
BP | GO:0009245 | lipid A biosynthetic process | IEP | Neighborhood |
MF | GO:0015075 | ion transmembrane transporter activity | IEP | Neighborhood |
MF | GO:0015077 | monovalent inorganic cation transmembrane transporter activity | IEP | Neighborhood |
MF | GO:0015078 | proton transmembrane transporter activity | IEP | Neighborhood |
MF | GO:0015291 | secondary active transmembrane transporter activity | IEP | Neighborhood |
MF | GO:0015297 | antiporter activity | IEP | Neighborhood |
MF | GO:0015298 | solute:cation antiporter activity | IEP | Neighborhood |
MF | GO:0015299 | solute:proton antiporter activity | IEP | Neighborhood |
MF | GO:0015318 | inorganic molecular entity transmembrane transporter activity | IEP | Neighborhood |
BP | GO:0015672 | monovalent inorganic cation transport | IEP | Neighborhood |
BP | GO:0016051 | carbohydrate biosynthetic process | IEP | Neighborhood |
BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
BP | GO:0016311 | dephosphorylation | IEP | Neighborhood |
CC | GO:0016459 | myosin complex | IEP | Neighborhood |
MF | GO:0016462 | pyrophosphatase activity | IEP | Neighborhood |
MF | GO:0016740 | transferase activity | IEP | Neighborhood |
MF | GO:0016763 | transferase activity, transferring pentosyl groups | IEP | Neighborhood |
MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | Neighborhood |
MF | GO:0016775 | phosphotransferase activity, nitrogenous group as acceptor | IEP | Neighborhood |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | Neighborhood |
MF | GO:0016787 | hydrolase activity | IEP | Neighborhood |
MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Neighborhood |
MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Neighborhood |
MF | GO:0016887 | ATPase activity | IEP | Neighborhood |
MF | GO:0017076 | purine nucleotide binding | IEP | Neighborhood |
MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Neighborhood |
CC | GO:0019867 | outer membrane | IEP | Neighborhood |
MF | GO:0022857 | transmembrane transporter activity | IEP | Neighborhood |
MF | GO:0022890 | inorganic cation transmembrane transporter activity | IEP | Neighborhood |
MF | GO:0030554 | adenyl nucleotide binding | IEP | Neighborhood |
MF | GO:0032553 | ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Neighborhood |
BP | GO:0032774 | RNA biosynthetic process | IEP | Neighborhood |
CC | GO:0033177 | proton-transporting two-sector ATPase complex, proton-transporting domain | IEP | Neighborhood |
CC | GO:0033179 | proton-transporting V-type ATPase, V0 domain | IEP | Neighborhood |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Neighborhood |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Neighborhood |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Neighborhood |
BP | GO:0035556 | intracellular signal transduction | IEP | Neighborhood |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
MF | GO:0036094 | small molecule binding | IEP | Neighborhood |
MF | GO:0042623 | ATPase activity, coupled | IEP | Neighborhood |
MF | GO:0043167 | ion binding | IEP | Neighborhood |
MF | GO:0043168 | anion binding | IEP | Neighborhood |
CC | GO:0043226 | organelle | IEP | Neighborhood |
CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood |
CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood |
CC | GO:0044422 | organelle part | IEP | Neighborhood |
CC | GO:0044424 | intracellular part | IEP | Neighborhood |
CC | GO:0044428 | nuclear part | IEP | Neighborhood |
CC | GO:0044430 | cytoskeletal part | IEP | Neighborhood |
CC | GO:0044446 | intracellular organelle part | IEP | Neighborhood |
CC | GO:0044459 | plasma membrane part | IEP | Neighborhood |
CC | GO:0044464 | cell part | IEP | Neighborhood |
BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
BP | GO:0046493 | lipid A metabolic process | IEP | Neighborhood |
MF | GO:0060089 | molecular transducer activity | IEP | Neighborhood |
MF | GO:0070035 | purine NTP-dependent helicase activity | IEP | Neighborhood |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Neighborhood |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | Neighborhood |
MF | GO:0097747 | RNA polymerase activity | IEP | Neighborhood |
CC | GO:0098797 | plasma membrane protein complex | IEP | Neighborhood |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Neighborhood |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Neighborhood |
BP | GO:1901269 | lipooligosaccharide metabolic process | IEP | Neighborhood |
BP | GO:1901271 | lipooligosaccharide biosynthetic process | IEP | Neighborhood |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
No external refs found! |