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  5. LOC_Os06g08660.1

LOC_Os06g08660.1


Description : Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana (sp|q9suh6|pp341_arath : 757.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g08660.1
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00190360 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
AMTR_s00039p00210570 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 Archaeplastida
AMTR_s00103p00160020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
AMTR_s00170p00032020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16860... 0.11 Archaeplastida
Smo101 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Smo102968 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.04 Archaeplastida
Smo110409 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.02 Archaeplastida
Smo124032 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.02 Archaeplastida
Smo133872 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.05 Archaeplastida
Smo138241 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
Smo82859 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.03 Archaeplastida
Smo84768 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.05 Archaeplastida
Smo98388 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Zm00001e020567_P001 No alias RNA editing factor (MEF7) 0.02 Archaeplastida
Zm00001e020583_P001 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.06 Archaeplastida
Zm00001e041246_P001 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0015399 primary active transmembrane transporter activity IEP Neighborhood
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Neighborhood
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Neighborhood
InterPro domains Description Start Stop
IPR032867 DYW_dom 653 777
IPR002885 Pentatricopeptide_repeat 478 525
IPR002885 Pentatricopeptide_repeat 381 425
IPR002885 Pentatricopeptide_repeat 554 577
IPR002885 Pentatricopeptide_repeat 279 308
IPR002885 Pentatricopeptide_repeat 251 275
No external refs found!