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  5. LOC_Os06g08930.1

LOC_Os06g08930.1


Description : ligand-gated cation channel (GLR)


Gene families : OG0000085 (Archaeplastida) Phylogenetic Tree(s): OG0000085_tree ,
OG_05_0010165 (LandPlants) Phylogenetic Tree(s): OG_05_0010165_tree ,
OG_06_0009072 (SeedPlants) Phylogenetic Tree(s): OG_06_0009072_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g08930.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00179820 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.02 Archaeplastida
AMTR_s00019p00182440 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.03 Archaeplastida
AMTR_s00019p00184790 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.03 Archaeplastida
AMTR_s00021p00176450 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.03 Archaeplastida
AMTR_s00130p00078370 evm_27.TU.AmTr_v1... No description available 0.05 Archaeplastida
AT5G11210 GLR2.5, ATGLR2.5 glutamate receptor 2.5 0.06 Archaeplastida
AT5G48410 ATGLR1.3, GLR1.3 glutamate receptor 1.3 0.04 Archaeplastida
GSVIVT01014244001 No alias Solute transport.channels.GLR ligand-gated cation channel 0.04 Archaeplastida
GSVIVT01021159001 No alias Solute transport.channels.GLR ligand-gated cation channel 0.05 Archaeplastida
GSVIVT01033129001 No alias Solute transport.channels.GLR ligand-gated cation channel 0.02 Archaeplastida
Gb_28362 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
LOC_Os06g06130.1 No alias ligand-gated cation channel (GLR) 0.04 Archaeplastida
LOC_Os06g08900.1 No alias ligand-gated cation channel (GLR) 0.04 Archaeplastida
LOC_Os09g26144.1 No alias ligand-gated cation channel (GLR) 0.04 Archaeplastida
MA_10434521g0010 No alias ligand-gated cation channel (GLR) 0.04 Archaeplastida
MA_6222576g0010 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
MA_9896648g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc02g077290.2.1 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
Zm00001e032648_P001 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0015276 ligand-gated ion channel activity IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0005516 calmodulin binding IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001638 Solute-binding_3/MltF_N 2 254
IPR001320 Iontro_rcpt 255 291
No external refs found!