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  5. AMTR_s00007p00102750

AMTR_s00007p00102750 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00007.61

Description : RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor


Gene families : OG0002052 (Archaeplastida) Phylogenetic Tree(s): OG0002052_tree ,
OG_05_0001758 (LandPlants) Phylogenetic Tree(s): OG_05_0001758_tree ,
OG_06_0001743 (SeedPlants) Phylogenetic Tree(s): OG_06_0001743_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00007p00102750
Cluster HCCA: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
AT2G40140 SZF2, ATSZF2, ZFAR1, CZF1 zinc finger (CCCH-type) family protein 0.03 Archaeplastida
AT3G55980 ATSZF1, SZF1 salt-inducible zinc finger 1 0.03 Archaeplastida
GSVIVT01032807001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.02 Archaeplastida
Solyc05g052570.3.1 No alias mRNA-binding regulatory factor (TZF) 0.04 Archaeplastida
Solyc10g080260.3.1 No alias mRNA-binding regulatory factor (TZF) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004497 monooxygenase activity IEP Neighborhood
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Neighborhood
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
MF GO:0042802 identical protein binding IEP Neighborhood
BP GO:0043086 negative regulation of catalytic activity IEP Neighborhood
BP GO:0044092 negative regulation of molecular function IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0050790 regulation of catalytic activity IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0065009 regulation of molecular function IEP Neighborhood
InterPro domains Description Start Stop
IPR020683 Ankyrin_rpt-contain_dom 71 144
IPR000571 Znf_CCCH 262 283
No external refs found!