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  5. LOC_Os06g09090.1

LOC_Os06g09090.1


Description : ligand-gated cation channel (GLR)


Gene families : OG0000085 (Archaeplastida) Phylogenetic Tree(s): OG0000085_tree ,
OG_05_0010165 (LandPlants) Phylogenetic Tree(s): OG_05_0010165_tree ,
OG_06_0009072 (SeedPlants) Phylogenetic Tree(s): OG_06_0009072_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g09090.1
Cluster HCCA: Cluster_243

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00183450 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.03 Archaeplastida
AT2G24720 GLR2.2, ATGLR2.2 glutamate receptor 2.2 0.03 Archaeplastida
AT2G29120 GLR2.7, ATGLR2.7 glutamate receptor 2.7 0.03 Archaeplastida
AT5G11210 GLR2.5, ATGLR2.5 glutamate receptor 2.5 0.02 Archaeplastida
AT5G48400 ATGLR1.2, GLR1.2 Glutamate receptor family protein 0.02 Archaeplastida
AT5G48410 ATGLR1.3, GLR1.3 glutamate receptor 1.3 0.02 Archaeplastida
GSVIVT01033142001 No alias Solute transport.channels.GLR ligand-gated cation channel 0.03 Archaeplastida
GSVIVT01033163001 No alias Solute transport.channels.GLR ligand-gated cation channel 0.02 Archaeplastida
Gb_20613 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
LOC_Os06g08880.1 No alias ligand-gated cation channel (GLR) 0.04 Archaeplastida
MA_10426811g0010 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
MA_10430853g0010 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
MA_391859g0010 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
Solyc02g077290.2.1 No alias ligand-gated cation channel (GLR) 0.02 Archaeplastida
Solyc06g063180.3.1 No alias ligand-gated cation channel (GLR) 0.02 Archaeplastida
Zm00001e013023_P001 No alias ligand-gated cation channel (GLR) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0015276 ligand-gated ion channel activity IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
MF GO:0008171 O-methyltransferase activity IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
MF GO:0046422 violaxanthin de-epoxidase activity IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001638 Solute-binding_3/MltF_N 107 255
IPR001320 Iontro_rcpt 32 287
No external refs found!