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  5. LOC_Os06g12840.1

LOC_Os06g12840.1


Description : Protein ALTERED XYLOGLUCAN 4 OS=Arabidopsis thaliana (sp|o04523|tbl27_arath : 301.0)


Gene families : OG0000288 (Archaeplastida) Phylogenetic Tree(s): OG0000288_tree ,
OG_05_0018830 (LandPlants) Phylogenetic Tree(s): OG_05_0018830_tree ,
OG_06_0018376 (SeedPlants) Phylogenetic Tree(s): OG_06_0018376_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g12840.1
Cluster HCCA: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00266030 evm_27.TU.AmTr_v1... Protein trichome birefringence-like 19 OS=Arabidopsis thaliana 0.07 Archaeplastida
AMTR_s00006p00266110 evm_27.TU.AmTr_v1... Protein trichome birefringence-like 19 OS=Arabidopsis thaliana 0.07 Archaeplastida
AMTR_s00088p00114920 evm_27.TU.AmTr_v1... Protein ALTERED XYLOGLUCAN 4-like OS=Arabidopsis thaliana 0.03 Archaeplastida
AT1G01430 TBL25 TRICHOME BIREFRINGENCE-LIKE 25 0.03 Archaeplastida
AT1G70230 TBL27 TRICHOME BIREFRINGENCE-LIKE 27 0.03 Archaeplastida
AT4G01080 TBL26 TRICHOME BIREFRINGENCE-LIKE 26 0.04 Archaeplastida
AT5G15890 TBL21 TRICHOME BIREFRINGENCE-LIKE 21 0.02 Archaeplastida
GSVIVT01019502001 No alias Protein trichome birefringence-like 23 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01036469001 No alias Protein trichome birefringence-like 19 OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_23681 No alias Protein trichome birefringence-like 18 OS=Arabidopsis... 0.02 Archaeplastida
Gb_25866 No alias mannan O-acetyltransferase (MOAT) 0.03 Archaeplastida
LOC_Os01g46400.1 No alias Protein trichome birefringence-like 19 OS=Arabidopsis... 0.04 Archaeplastida
MA_245850g0010 No alias mannan O-acetyltransferase (MOAT) 0.02 Archaeplastida
Pp3c16_10090V3.1 No alias TRICHOME BIREFRINGENCE-LIKE 25 0.04 Archaeplastida
Pp3c2_37020V3.1 No alias TRICHOME BIREFRINGENCE-LIKE 25 0.03 Archaeplastida
Smo418889 No alias Protein trichome birefringence-like 19 OS=Arabidopsis thaliana 0.02 Archaeplastida
Solyc02g089680.4.1 No alias Protein trichome birefringence-like 19 OS=Arabidopsis... 0.03 Archaeplastida
Solyc02g089690.3.1 No alias Protein trichome birefringence-like 19 OS=Arabidopsis... 0.03 Archaeplastida
Solyc02g089710.3.1 No alias Protein trichome birefringence-like 19 OS=Arabidopsis... 0.05 Archaeplastida
Solyc03g046270.4.1 No alias Protein trichome birefringence-like 19 OS=Arabidopsis... 0.05 Archaeplastida
Zm00001e004741_P002 No alias Protein trichome birefringence-like 19 OS=Arabidopsis... 0.07 Archaeplastida
Zm00001e015715_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e015716_P001 No alias Protein trichome birefringence-like 20 OS=Arabidopsis... 0.07 Archaeplastida
Zm00001e020296_P001 No alias Protein trichome birefringence-like 20 OS=Arabidopsis... 0.08 Archaeplastida
Zm00001e020298_P002 No alias Protein trichome birefringence-like 19 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e030880_P002 No alias Protein ALTERED XYLOGLUCAN 4-like OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e030881_P001 No alias Protein ALTERED XYLOGLUCAN 4 OS=Arabidopsis thaliana... 0.21 Archaeplastida
Zm00001e030883_P001 No alias Protein ALTERED XYLOGLUCAN 4 OS=Arabidopsis thaliana... 0.22 Archaeplastida
Zm00001e036072_P001 No alias Protein ALTERED XYLOGLUCAN 4 OS=Arabidopsis thaliana... 0.24 Archaeplastida
Zm00001e036803_P001 No alias Protein trichome birefringence-like 19 OS=Arabidopsis... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003855 3-dehydroquinate dehydratase activity IEP Neighborhood
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Neighborhood
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
MF GO:0008417 fucosyltransferase activity IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Neighborhood
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Neighborhood
BP GO:0042546 cell wall biogenesis IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR026057 PC-Esterase 137 428
IPR025846 PMR5_N_dom 84 136
No external refs found!