1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os06g13080.1

LOC_Os06g13080.1


Description : E3 ubiquitin ligase (PUB)


Gene families : OG0003551 (Archaeplastida) Phylogenetic Tree(s): OG0003551_tree ,
OG_05_0002338 (LandPlants) Phylogenetic Tree(s): OG_05_0002338_tree ,
OG_06_0001993 (SeedPlants) Phylogenetic Tree(s): OG_06_0001993_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g13080.1
Cluster HCCA: Cluster_332

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00240140 evm_27.TU.AmTr_v1... U-box domain-containing protein 4 OS=Arabidopsis thaliana 0.05 Archaeplastida
AT3G47820 PUB39 PLANT U-BOX 39 0.04 Archaeplastida
Gb_16859 No alias E3 ubiquitin ligase (PUB) 0.02 Archaeplastida
LOC_Os08g32610.1 No alias E3 ubiquitin ligase (PUB) 0.04 Archaeplastida
Mp1g18000.1 No alias E3 ubiquitin ligase (PUB) 0.05 Archaeplastida
Smo90666 No alias U-box domain-containing protein 38 OS=Arabidopsis thaliana 0.05 Archaeplastida
Zm00001e034032_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e036060_P001 No alias E3 ubiquitin ligase (PUB) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0008037 cell recognition IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
BP GO:0048544 recognition of pollen IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000225 Armadillo 247 284
IPR003613 Ubox_domain 32 105
No external refs found!