AMTR_s00007p00159640 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00007.122

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL17 component

Gene families : OG0001876 (Archaeplastida) Phylogenetic Tree(s): OG0001876_tree ,
OG_05_0001644 (LandPlants) Phylogenetic Tree(s): OG_05_0001644_tree ,
OG_06_0001980 (SeedPlants) Phylogenetic Tree(s): OG_06_0001980_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00007p00159640
Cluster	HCCA: Cluster_265

Target	Alias	Description	ECC score	Gene Family Method
AT1G27400	No alias	Ribosomal protein L22p/L17e family protein	0.2	Archaeplastida
AT1G67430	No alias	Ribosomal protein L22p/L17e family protein	0.12	Archaeplastida
Cpa\|evm.model.tig00001215.8	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.11	Archaeplastida
Cre13.g568900	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.21	Archaeplastida
GSVIVT01008528001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.19	Archaeplastida
GSVIVT01010449001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.12	Archaeplastida
GSVIVT01010450001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.21	Archaeplastida
LOC_Os08g41810.1	No alias	component RPL17 of LSU proteome component	0.1	Archaeplastida
LOC_Os09g08430.1	No alias	component RPL17 of LSU proteome component	0.09	Archaeplastida
MA_10430182g0010	No alias	component RPL17 of LSU proteome component	0.06	Archaeplastida
MA_64923g0010	No alias	component RPL17 of LSU proteome component	0.16	Archaeplastida
Mp1g10230.1	No alias	component RPL17 of LSU proteome component	0.18	Archaeplastida
Pp3c11_5840V3.1	No alias	Ribosomal protein L22p/L17e family protein	0.2	Archaeplastida
Pp3c1_6650V3.1	No alias	Ribosomal protein L22p/L17e family protein	0.1	Archaeplastida
Pp3c2_29840V3.1	No alias	Ribosomal protein L22p/L17e family protein	0.2	Archaeplastida
Pp3c7_25220V3.1	No alias	Ribosomal protein L22p/L17e family protein	0.1	Archaeplastida
Pp3c7_25240V3.1	No alias	Ribosomal protein L22p/L17e family protein	0.22	Archaeplastida
Smo96251	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.1	Archaeplastida
Solyc03g111230.4.1	No alias	component RPL17 of LSU proteome component	0.05	Archaeplastida
Solyc06g071870.3.1	No alias	component RPL17 of LSU proteome component	0.16	Archaeplastida
Solyc06g071880.4.1	No alias	component RPL17 of LSU proteome component	0.17	Archaeplastida
Zm00001e003661_P001	No alias	component RPL17 of LSU proteome component	0.15	Archaeplastida
Zm00001e005470_P001	No alias	component RPL17 of LSU proteome component	0.02	Archaeplastida
Zm00001e021953_P003	No alias	component RPL17 of LSU proteome component	0.09	Archaeplastida
Zm00001e026882_P002	No alias	component RPL17 of LSU proteome component	0.07	Archaeplastida
Zm00001e031261_P001	No alias	component RPL17 of LSU proteome component	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Neighborhood
MF	GO:0004298	threonine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0005048	signal sequence binding	IEP	Neighborhood
MF	GO:0005544	calcium-dependent phospholipid binding	IEP	Neighborhood
CC	GO:0005786	signal recognition particle, endoplasmic reticulum targeting	IEP	Neighborhood
CC	GO:0005839	proteasome core complex	IEP	Neighborhood
BP	GO:0006351	transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006413	translational initiation	IEP	Neighborhood
BP	GO:0006414	translational elongation	IEP	Neighborhood
BP	GO:0006605	protein targeting	IEP	Neighborhood
BP	GO:0006612	protein targeting to membrane	IEP	Neighborhood
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	Neighborhood
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	Neighborhood
BP	GO:0006890	retrograde vesicle-mediated transport, Golgi to ER	IEP	Neighborhood
MF	GO:0008312	7S RNA binding	IEP	Neighborhood
MF	GO:0016779	nucleotidyltransferase activity	IEP	Neighborhood
CC	GO:0030117	membrane coat	IEP	Neighborhood
CC	GO:0030120	vesicle coat	IEP	Neighborhood
CC	GO:0030126	COPI vesicle coat	IEP	Neighborhood
MF	GO:0030942	endoplasmic reticulum signal peptide binding	IEP	Neighborhood
BP	GO:0032774	RNA biosynthetic process	IEP	Neighborhood
MF	GO:0033218	amide binding	IEP	Neighborhood
BP	GO:0033365	protein localization to organelle	IEP	Neighborhood
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Neighborhood
BP	GO:0034613	cellular protein localization	IEP	Neighborhood
MF	GO:0042277	peptide binding	IEP	Neighborhood
CC	GO:0044433	cytoplasmic vesicle part	IEP	Neighborhood
BP	GO:0045047	protein targeting to ER	IEP	Neighborhood
BP	GO:0048193	Golgi vesicle transport	IEP	Neighborhood
CC	GO:0048500	signal recognition particle	IEP	Neighborhood
MF	GO:0070003	threonine-type peptidase activity	IEP	Neighborhood
BP	GO:0070727	cellular macromolecule localization	IEP	Neighborhood
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	Neighborhood
BP	GO:0072594	establishment of protein localization to organelle	IEP	Neighborhood
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	Neighborhood
BP	GO:0072657	protein localization to membrane	IEP	Neighborhood
BP	GO:0090150	establishment of protein localization to membrane	IEP	Neighborhood
BP	GO:0097659	nucleic acid-templated transcription	IEP	Neighborhood
MF	GO:0097747	RNA polymerase activity	IEP	Neighborhood
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001063	Ribosomal_L22	17	153

External Links

No external refs found!

AMTR_s00007p00159640 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation