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  5. LOC_Os06g17840.1

LOC_Os06g17840.1


Description : cohesin cofactor (PDS5)


Gene families : OG0000410 (Archaeplastida) Phylogenetic Tree(s): OG0000410_tree ,
OG_05_0002118 (LandPlants) Phylogenetic Tree(s): OG_05_0002118_tree ,
OG_06_0002144 (SeedPlants) Phylogenetic Tree(s): OG_06_0002144_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g17840.1
Cluster HCCA: Cluster_174

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00192140 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.sister chromatid... 0.06 Archaeplastida
AMTR_s00061p00213120 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.sister chromatid... 0.03 Archaeplastida
AMTR_s00065p00174980 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.sister chromatid... 0.05 Archaeplastida
AT1G15940 No alias Tudor/PWWP/MBT superfamily protein 0.03 Archaeplastida
AT1G77600 No alias ARM repeat superfamily protein 0.06 Archaeplastida
AT4G31880 No alias LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant... 0.08 Archaeplastida
AT5G47690 No alias binding 0.05 Archaeplastida
Cre01.g032550 No alias No description available 0.01 Archaeplastida
GSVIVT01002731001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.04 Archaeplastida
GSVIVT01002824001 No alias No description available 0.08 Archaeplastida
GSVIVT01035890001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.04 Archaeplastida
Gb_09525 No alias cohesin cofactor (PDS5) 0.04 Archaeplastida
Gb_23673 No alias cohesin cofactor (PDS5) 0.04 Archaeplastida
MA_10093130g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_10426926g0010 No alias cohesin cofactor (PDS5) 0.04 Archaeplastida
MA_10434055g0010 No alias cohesin cofactor (PDS5) 0.06 Archaeplastida
MA_10434304g0010 No alias cohesin cofactor (PDS5) 0.04 Archaeplastida
MA_180523g0010 No alias cohesin cofactor (PDS5) 0.03 Archaeplastida
MA_214607g0010 No alias cohesin cofactor (PDS5) 0.02 Archaeplastida
MA_25261g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_523g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_815998g0010 No alias cohesin cofactor (PDS5) 0.02 Archaeplastida
Mp3g13850.1 No alias cohesin cofactor (PDS5) 0.02 Archaeplastida
Pp3c10_24900V3.1 No alias binding 0.1 Archaeplastida
Pp3c20_23000V3.1 No alias binding 0.06 Archaeplastida
Pp3c23_10270V3.1 No alias binding 0.09 Archaeplastida
Solyc03g116973.1.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc03g117010.4.1 No alias cohesin cofactor (PDS5) 0.04 Archaeplastida
Solyc06g065710.3.1 No alias cohesin cofactor (PDS5) 0.09 Archaeplastida
Solyc11g012770.2.1 No alias cohesin cofactor (PDS5) 0.12 Archaeplastida
Zm00001e007658_P001 No alias cohesin cofactor (PDS5) 0.02 Archaeplastida
Zm00001e015094_P002 No alias cohesin cofactor (PDS5) 0.14 Archaeplastida
Zm00001e019139_P001 No alias cohesin cofactor (PDS5) 0.05 Archaeplastida
Zm00001e022962_P003 No alias cohesin cofactor (PDS5) 0.07 Archaeplastida
Zm00001e030989_P001 No alias cohesin cofactor (PDS5) 0.16 Archaeplastida
Zm00001e036853_P003 No alias cohesin cofactor (PDS5) 0.11 Archaeplastida
Zm00001e041168_P001 No alias cohesin cofactor (PDS5) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006528 asparagine metabolic process IEP Neighborhood
BP GO:0006529 asparagine biosynthetic process IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009066 aspartate family amino acid metabolic process IEP Neighborhood
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!