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  5. AMTR_s00007p00168430

AMTR_s00007p00168430


Description : Vesicle trafficking.clathrin coated vesicle (CCV) machinery.clathrin triskelion.heavy chain


Gene families : OG0002049 (Archaeplastida) Phylogenetic Tree(s): OG0002049_tree ,
OG_05_0002345 (LandPlants) Phylogenetic Tree(s): OG_05_0002345_tree ,
OG_06_0003304 (SeedPlants) Phylogenetic Tree(s): OG_06_0003304_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00007p00168430
Cluster HCCA: Cluster_233

Target Alias Description ECC score Gene Family Method Actions
AT3G08530 No alias Clathrin, heavy chain 0.05 Archaeplastida
AT3G11130 No alias Clathrin, heavy chain 0.11 Archaeplastida
Cpa|evm.model.tig00000042.11 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.07 Archaeplastida
Cre02.g101400 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.02 Archaeplastida
GSVIVT01024708001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.06 Archaeplastida
GSVIVT01032792001 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.1 Archaeplastida
Gb_33028 No alias heavy chain of clathrin triskelion 0.12 Archaeplastida
Gb_33029 No alias Clathrin heavy chain 2 OS=Arabidopsis thaliana... 0.14 Archaeplastida
LOC_Os11g01380.1 No alias heavy chain of clathrin triskelion 0.1 Archaeplastida
LOC_Os12g01390.1 No alias heavy chain of clathrin triskelion 0.09 Archaeplastida
MA_47260g0010 No alias Clathrin heavy chain 2 OS=Oryza sativa subsp. japonica... 0.09 Archaeplastida
MA_5992036g0010 No alias Clathrin heavy chain 1 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Mp6g19660.1 No alias heavy chain of clathrin triskelion 0.07 Archaeplastida
Pp3c1_37710V3.1 No alias Clathrin, heavy chain 0.12 Archaeplastida
Pp3c2_3220V3.1 No alias Clathrin, heavy chain 0.07 Archaeplastida
Smo149750 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.07 Archaeplastida
Solyc03g096000.3.1 No alias heavy chain of clathrin triskelion 0.09 Archaeplastida
Solyc05g052510.4.1 No alias heavy chain of clathrin triskelion 0.09 Archaeplastida
Solyc06g051310.3.1 No alias heavy chain of clathrin triskelion 0.06 Archaeplastida
Zm00001e009296_P003 No alias heavy chain of clathrin triskelion 0.13 Archaeplastida
Zm00001e020822_P001 No alias heavy chain of clathrin triskelion 0.14 Archaeplastida
Zm00001e023940_P002 No alias heavy chain of clathrin triskelion 0.14 Archaeplastida
Zm00001e039167_P001 No alias heavy chain of clathrin triskelion 0.14 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEA Interproscan
CC GO:0030132 clathrin coat of coated pit IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009314 response to radiation IEP Neighborhood
BP GO:0009416 response to light stimulus IEP Neighborhood
BP GO:0009581 detection of external stimulus IEP Neighborhood
BP GO:0009582 detection of abiotic stimulus IEP Neighborhood
BP GO:0009583 detection of light stimulus IEP Neighborhood
BP GO:0009584 detection of visible light IEP Neighborhood
BP GO:0009605 response to external stimulus IEP Neighborhood
BP GO:0009628 response to abiotic stimulus IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
BP GO:0018298 protein-chromophore linkage IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
CC GO:0030119 AP-type membrane coat adaptor complex IEP Neighborhood
CC GO:0030126 COPI vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
CC GO:0030131 clathrin adaptor complex IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0032012 regulation of ARF protein signal transduction IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0046578 regulation of Ras protein signal transduction IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051606 detection of stimulus IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1902531 regulation of intracellular signal transduction IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000547 Clathrin_H-chain/VPS_repeat 1288 1431
IPR000547 Clathrin_H-chain/VPS_repeat 993 1133
IPR000547 Clathrin_H-chain/VPS_repeat 1442 1579
IPR000547 Clathrin_H-chain/VPS_repeat 1146 1281
IPR000547 Clathrin_H-chain/VPS_repeat 701 841
IPR000547 Clathrin_H-chain/VPS_repeat 850 983
IPR000547 Clathrin_H-chain/VPS_repeat 557 691
IPR015348 Clathrin_H-chain_linker_core 344 367
IPR022365 Clathrin_H-chain_propeller_rpt 156 197
IPR022365 Clathrin_H-chain_propeller_rpt 20 56
No external refs found!