1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00007p00169630

AMTR_s00007p00169630 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00007.133

Description : RNA biosynthesis.transcriptional activation.MYB superfamily.MYB transcription factor


Gene families : OG0000002 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000116 (LandPlants) Phylogenetic Tree(s): OG_05_0000116_tree ,
OG_06_0000157 (SeedPlants) Phylogenetic Tree(s): OG_06_0000157_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00007p00169630
Cluster HCCA: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
AT1G63910 MYB103, AtMYB103 myb domain protein 103 0.04 Archaeplastida
AT3G23250 ATMYB15, ATY19, MYB15 myb domain protein 15 0.02 Archaeplastida
AT4G05100 AtMYB74, MYB74 myb domain protein 74 0.02 Archaeplastida
AT4G21440 ATMYB102, ATM4, MYB102 MYB-like 102 0.04 Archaeplastida
AT4G28110 MYB41, AtMYB41 myb domain protein 41 0.03 Archaeplastida
AT4G33450 ATMYB69, MYB69 myb domain protein 69 0.03 Archaeplastida
AT4G34990 MYB32, AtMYB32 myb domain protein 32 0.03 Archaeplastida
AT4G37780 ATMYB87, MYB87 myb domain protein 87 0.03 Archaeplastida
AT5G02320 ATMYB3R5, MYB3R-5 myb domain protein 3r-5 0.03 Archaeplastida
AT5G17800 MYB56, AtMYB56 myb domain protein 56 0.04 Archaeplastida
AT5G40330 ATMYBRTF, ATMYB23, MYB23 myb domain protein 23 0.03 Archaeplastida
AT5G62470 MYBCOV1, MYB96, ATMYB96 myb domain protein 96 0.03 Archaeplastida
AT5G67300 MYBR1, MYB44,... myb domain protein r1 0.05 Archaeplastida
Cre02.g108350 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
Cre07.g345350 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
GSVIVT01007740001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01017716001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
GSVIVT01029941001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.05 Archaeplastida
Gb_00379 No alias transcription factor (MYB) 0.02 Archaeplastida
Gb_03227 No alias transcription factor (MYB) 0.05 Archaeplastida
Gb_24073 No alias transcription factor (MYB) 0.04 Archaeplastida
Gb_29789 No alias transcription factor (MYB) 0.02 Archaeplastida
LOC_Os01g52410.1 No alias transcription factor (MYB) 0.02 Archaeplastida
LOC_Os01g74590.1 No alias transcription factor (MYB) 0.02 Archaeplastida
LOC_Os02g09480.1 No alias transcription factor (MYB) 0.03 Archaeplastida
LOC_Os02g41510.1 No alias transcription factor (MYB) 0.03 Archaeplastida
LOC_Os03g20090.1 No alias transcription factor (MYB) 0.03 Archaeplastida
LOC_Os04g43680.1 No alias transcription factor (MYB) 0.03 Archaeplastida
LOC_Os04g50770.1 No alias transcription factor (MYB) 0.04 Archaeplastida
LOC_Os06g43090.1 No alias transcription factor (MYB) 0.04 Archaeplastida
LOC_Os07g31470.1 No alias transcription factor (MYB) 0.02 Archaeplastida
LOC_Os07g44090.3 No alias transcription factor (MYB) 0.02 Archaeplastida
LOC_Os08g33940.1 No alias transcription factor (MYB) 0.02 Archaeplastida
LOC_Os09g36730.1 No alias transcription factor (MYB) 0.02 Archaeplastida
LOC_Os10g33810.1 No alias transcription factor (MYB) 0.03 Archaeplastida
LOC_Os12g03150.1 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_10430220g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_10431212g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_117992g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_128871g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_246142g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_316475g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
MA_64405g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_7105735g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_76990g0010 No alias transcription factor (MYB) 0.02 Archaeplastida
MA_9483804g0010 No alias transcription factor (MYB) 0.03 Archaeplastida
Mp5g14610.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Pp3c15_7790V3.1 No alias myb domain protein 55 0.03 Archaeplastida
Pp3c17_7730V3.1 No alias myb domain protein 55 0.03 Archaeplastida
Pp3c1_1650V3.1 No alias myb domain protein 105 0.03 Archaeplastida
Pp3c6_9970V3.1 No alias myb domain protein 106 0.02 Archaeplastida
Solyc02g087960.3.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc02g092930.1.1 No alias transcription factor (MYB) 0.06 Archaeplastida
Solyc02g093740.3.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc03g005570.3.1 No alias transcription factor (MYB) 0.05 Archaeplastida
Solyc03g116100.3.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc04g078420.1.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc05g007710.3.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc05g014290.4.1 No alias transcription factor (MYB) 0.02 Archaeplastida
Solyc10g005460.3.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Solyc12g099130.2.1 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e004568_P001 No alias transcription factor (MYB) 0.04 Archaeplastida
Zm00001e005044_P002 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e007422_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e013910_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e015235_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e016583_P001 No alias transcription factor (MYB) 0.05 Archaeplastida
Zm00001e017428_P003 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e018471_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e020044_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e023024_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e023100_P001 No alias transcription factor (MYB) 0.05 Archaeplastida
Zm00001e025867_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e026166_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e026426_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e030480_P001 No alias transcription factor (MYB) 0.05 Archaeplastida
Zm00001e032298_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e032347_P001 No alias transcription factor (MYB) 0.02 Archaeplastida
Zm00001e034072_P001 No alias transcription factor (MYB) 0.05 Archaeplastida
Zm00001e035619_P002 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e037510_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e037956_P001 No alias transcription factor (MYB) 0.03 Archaeplastida
Zm00001e041239_P001 No alias transcription factor (MYB) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004478 methionine adenosyltransferase activity IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Neighborhood
MF GO:0008198 ferrous iron binding IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
BP GO:0044272 sulfur compound biosynthetic process IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
BP GO:0046500 S-adenosylmethionine metabolic process IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
BP GO:0051259 protein complex oligomerization IEP Neighborhood
BP GO:0051260 protein homooligomerization IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001005 SANT/Myb 9 54
IPR001005 SANT/Myb 63 105
No external refs found!